PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_39933 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 118aa MW: 13830.5 Da PI: 5.6157 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.6e-18 | 7 | 51 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr+T+eE+ l+++++ ++G++ W+ Ia +++ gRt++++k++w++++ PEQU_39933 7 GRMTPEEEHLILELHSKWGNK-WSQIAGKLP-GRTDNEIKNYWRTHM 51 89*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.098 | 1 | 55 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 2 | 53 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.84E-15 | 2 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-15 | 5 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-16 | 7 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-9 | 8 | 51 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
HPGLKHGRMT PEEEHLILEL HSKWGNKWSQ IAGKLPGRTD NEIKNYWRTH MRKMAQEKKR 60 NSPSSSSSSS SFSNGMENQE EVSFIVTMAE EKEEEVKVEV YPMDQLWNEM EFSSVWEC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020577748.1 | 1e-81 | myb-related protein MYBAS2-like | ||||
Swissprot | Q9LX82 | 5e-34 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A455LAB0 | 1e-39 | A0A455LAB0_9ASPA; Myb-related protein MYBAS2-like protein (Fragment) | ||||
STRING | XP_008457537.1 | 2e-34 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.3 | 5e-33 | myb domain protein 48 |
Publications ? help Back to Top | |||
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