PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_39798
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 378aa    MW: 42006.3 Da    PI: 6.7914
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_39798genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS270.45.8e-83163763374
        GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 + L+++A+ ++sg++  a+++Larl+++  sp+g+p+ R a+yf+eAL a  ++s+++++     s  s+ ++  +l+a+k+f e+sP+l f+ +t  q
  PEQU_39798  16 DPLFKAAKLLESGNTISAHRILARLNHQlPSPSGKPFLRTAFYFKEALLAISNGSSEQCSF----SLGSPLDVLLKLSAYKAFAEISPVLLFTSFTSTQ 110
                 569***********************998*******************9998887776664....4444455999************************ PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL. 194
                  Ile+++g++ +H+iDfd++ G +WpaL+q+L++R+    g+p +lRiT+++s +s+++ el+ ++e+L++fA+ l+vpfe n+l    +e++++ ++ 
  PEQU_39798 111 IILEELAGANVIHVIDFDVGVGSHWPALIQELSERRsavTGAPlQLRITAFVSVASHHQVELHLIHENLNHFAADLNVPFELNFL---PFESFDPASIi 206
                 *********************************99978855666****************************************9...99999999985 PP

        GRAS 195 .rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  +++p + a+aVn+++   + +   +s++s    +L l+k+lsPk+++ v+   d+++ sF +++l++++  ++l+ds+ea+ +   e    +Er +l+
  PEQU_39798 207 fSCSPsDVAIAVNFAFGFCHHH---LSTQS----LLFLIKQLSPKILISVNLGYDRGDISFSHHVLHSFQSTTVLLDSIEAS-GVSPEITDRIERYMLR 297
                 567777889******9876665...56666....*********************************************888.4555777889****** PP

        GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++ivn +  + +      e+l  Wr  +++aGF p+++s++a++qa++ll+k +++g++ve+ +++l+l Wk++++ +vSaWr
  PEQU_39798 298 PRIVNSLLGRYKT----GEKLLPWRTFFTSAGFVPLQFSNFAESQADCLLKKAQVRGFEVEKCEAALMLSWKQQEIAVVSAWR 376
                 *******998888....9****************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.0541356IPR005202Transcription factor GRAS
PfamPF035142.0E-8016376IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MQLPNEAAWQ QQAVIDPLFK AAKLLESGNT ISAHRILARL NHQLPSPSGK PFLRTAFYFK  60
EALLAISNGS SEQCSFSLGS PLDVLLKLSA YKAFAEISPV LLFTSFTSTQ IILEELAGAN  120
VIHVIDFDVG VGSHWPALIQ ELSERRSAVT GAPLQLRITA FVSVASHHQV ELHLIHENLN  180
HFAADLNVPF ELNFLPFESF DPASIIFSCS PSDVAIAVNF AFGFCHHHLS TQSLLFLIKQ  240
LSPKILISVN LGYDRGDISF SHHVLHSFQS TTVLLDSIEA SGVSPEITDR IERYMLRPRI  300
VNSLLGRYKT GEKLLPWRTF FTSAGFVPLQ FSNFAESQAD CLLKKAQVRG FEVEKCEAAL  360
MLSWKQQEIA VVSAWRCQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-254837636375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020595356.10.0scarecrow-like protein 6
TrEMBLA0A2I0XA341e-159A0A2I0XA34_9ASPA; Scarecrow-like protein 6
STRINGXP_008796953.11e-135(Phoenix dactylifera)
STRINGGSMUA_Achr1P05940_0011e-136(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-88GRAS family protein