PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_39797 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | AP2 | ||||||||
Protein Properties | Length: 632aa MW: 68774.5 Da PI: 6.5877 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.7 | 1.6e-14 | 213 | 272 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g PEQU_39797 213 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 272 57*******************666664477446**********99*************98 PP | |||||||
2 | AP2 | 46.9 | 7e-15 | 315 | 366 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PEQU_39797 315 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 366 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-11 | 213 | 272 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.89E-21 | 213 | 282 | No hit | No description |
SuperFamily | SSF54171 | 6.41E-17 | 213 | 282 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.9E-29 | 214 | 286 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-15 | 214 | 281 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.927 | 214 | 280 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-6 | 215 | 226 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 315 | 375 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.7E-10 | 315 | 366 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.98E-24 | 315 | 374 | No hit | No description |
SMART | SM00380 | 2.8E-33 | 316 | 380 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-18 | 316 | 374 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 316 | 374 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-6 | 356 | 376 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MASINNWLAF SLSPHELSSS QSHPERLIPS ADVSTGDCFG LSADSPSEQP LGITTLRQDV 60 PFDIMETFNR SNHQNQEWNM KSFDFKGSAS DLSMLVGSTG DRMNNHMEVE EPKLEDFLGS 120 HSSSGDYVFS DYNDVGSVAH SNSSIGLSMI KTWLRNQPVT QQVAEEKSGG GGGGLGESSS 180 SPERLVGGGS DGLSAVEAVA TRKSIDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG 240 QSRKGRQVYL GGYDKEDKAA RAYDLAALKY WGPTTTTNFP VSNYENELEE MKHMTRQEYV 300 ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA 360 AIKFRGLNAV TNFDMNRYDV KSILESSTLP IGGAAKRLKD TSEHSESIVI GSRRTNAMES 420 LASHYSGTIS ASSAGFGWPT IAFQQPQPQP QPLSIYYPNT NQRPWYKQEQ ETIAPAAATA 480 THNIHDLHHP NTHDFFQPST AAMNNFLSLQ DFATASLDHS TGSSTIVYSG FAGGSGGGFV 540 LPMSGHQGRG CFGEEQGKQS GVENYLGNSS YSSYQVGNQQ LPVGDVKAAA GYEQSGGFSG 600 WGLSVQATMA SRPGNVASVC HGAPLFSVWN DS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00610 | ChIP-seq | Transfer from AT5G17430 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020700646.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Swissprot | Q6PQQ4 | 1e-149 | BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM | ||||
TrEMBL | A0A2I0WSF5 | 0.0 | A0A2I0WSF5_9ASPA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
STRING | XP_008804192.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-135 | AP2 family protein |