PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_39742 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 253aa MW: 27799.8 Da PI: 10.9412 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 35.5 | 2.6e-11 | 22 | 85 | 1 | 60 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkr 60 +W+++ + +Li+ar e +l+rg+lk+++W+ev++++ ++ rs qCk++++ l+k+ PEQU_39742 22 CWSENATSVLIDARGEHFLKLNRGNLKQKQWQEVAEVVssrdDYTKPPRSDLQCKNRIDTLKKK 85 7*************************************8554445558999**********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.1E-16 | 20 | 92 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
NLTLALPIQS RSPSSAGGRE DCWSENATSV LIDARGEHFL KLNRGNLKQK QWQEVAEVVS 60 SRDDYTKPPR SDLQCKNRID TLKKKSKIGK SKMSVFTGAG LSSIIKTPPF TPQLPSPTPM 120 SPLPPQPALT SSTTKSLLRP VNGGRTRVGM GGMRDLAQAI LKFGQVYQRV ESSKLQETME 180 MEKQRMGFAR ELELQRMQFF KKTQMELSKL RSYLPPPGVG GGGGGGSSNN YLHHSRRHHH 240 QLAGNSSING TSG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020697655.1 | 1e-72 | trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 2e-33 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2I0WDT2 | 3e-71 | A0A2I0WDT2_9ASPA; Uncharacterized protein | ||||
STRING | XP_010264262.1 | 6e-63 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2404 | 30 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 6e-33 | sequence-specific DNA binding transcription factors |