PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_39610
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family SRS
Protein Properties Length: 346aa    MW: 37135.2 Da    PI: 7.3897
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_39610genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702202.99.1e-631222824154
      DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaeskkel 100
                 g+++CqdCGnqakkdC+h+RCRtCCk+rg+dC+th+kstWvpaa+rrer+ +++ +++  a s+    +a k++r l  + q+++++ + +s++ + ++
  PEQU_39610 122 GSSTCQDCGNQAKKDCSHRRCRTCCKNRGYDCSTHIKSTWVPAARRRERHLTASDSAAAVAVSSsgIISALKKPRLL--SFQTTTTTHESNSGTLPLSF 218
                 6789*********************************************6555444444444442355666777766..44555555555677777777 PP

      DUF702 101 etss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                 et s          lP +v+++avf+cvrv+s+ddge+e+aY++ v+igGhvfkG+Ly+qG +e
  PEQU_39610 219 ETGSshqdpsfrenLPGQVRAPAVFKCVRVTSIDDGEDEYAYHAKVNIGGHVFKGFLYNQGFDE 282
                 77777889999999***********************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.0E-60123281IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.2E-26125167IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-27233279IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGHEIVGCRS TNTQLRHSGD GWSSRRGRSS SLRDVYVVAP AASFHPPAAY HEQFLPSAEA  60
HSIIPLLTAS PYLADDDSRS SMIHLWQSHP LPSLQAPALP QNPNPSPSPE LESPDILFVT  120
GGSSTCQDCG NQAKKDCSHR RCRTCCKNRG YDCSTHIKST WVPAARRRER HLTASDSAAA  180
VAVSSSGIIS ALKKPRLLSF QTTTTTHESN SGTLPLSFET GSSHQDPSFR ENLPGQVRAP  240
AVFKCVRVTS IDDGEDEYAY HAKVNIGGHV FKGFLYNQGF DEGINTDLTG ISTAINVDND  300
VKNTSSTIPN FSELHLGSGG VRNAARSDIY SLGGLLGGAS FGNAIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020598373.10.0protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A2I0WD091e-140A0A2I0WD09_9ASPA; Uncharacterized protein
STRINGXP_008803345.15e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.27e-58Lateral root primordium (LRP) protein-related