PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_39568

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 167aa MW: 19024.7 Da PI: 4.4353

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_39568	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.3	1.1e-37	15	112	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaC++l r+C++dC+lapyfp++++ kf +vhk+FGasnv+k+l+ ++ e reda++s++yeA ar+rdPv+G++ i+ lq+ +e+l+++++ ++ PEQU_39568 15 PCAACRLLHRRCTTDCMLAPYFPSDNSDKFSVVHKVFGASNVIKMLHMIEGEWREDAVKSMIYEAYARVRDPVHGCTTAIFYLQSCIEELQEQIQDAE 112 7*******************************************************************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.188	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.8E-38	15	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MDFQSLPCWA KPELPCAACR LLHRRCTTDC MLAPYFPSDN SDKFSVVHKV FGASNVIKML 60 HMIEGEWRED AVKSMIYEAY ARVRDPVHGC TTAIFYLQSC IEELQEQIQD AERLLLESQE 120 QRNQLLCFLN QPFAPAYEEM SGGGGVENGL FGDSLMFMDR AYGFDSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-32	15	116	11	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-32	15	116	11	112	LOB family transfactor Ramosa2.1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020596917.1	1e-124	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-37	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2H3XCN2	3e-54	A0A2H3XCN2_PHODC; LOB domain-containing protein 25-like
STRING	XP_008781832.1	5e-55	(Phoenix dactylifera)
STRING	XP_008781843.1	5e-55	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17783	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	7e-40	LOB domain-containing protein 1