PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_39512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NF-X1 | ||||||||
Protein Properties | Length: 615aa MW: 66971.9 Da PI: 8.071 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 16.9 | 1.4e-05 | 265 | 284 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C+++CH+G C++C++ PEQU_39512 265 CGRHHCNQPCHTGSCGSCQE 284 ******************85 PP | |||||||
2 | zf-NF-X1 | 22.2 | 3e-07 | 485 | 503 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+Cq lCH G CppC PEQU_39512 485 CGNHTCQLLCHSGHCPPCL 503 ******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 5.3E-7 | 79 | 150 | No hit | No description |
PROSITE profile | PS50016 | 8.689 | 86 | 146 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.406 | 89 | 144 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 89 | 143 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00438 | 0.023 | 210 | 228 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 4.3 | 212 | 227 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.79E-9 | 255 | 303 | No hit | No description |
SMART | SM00438 | 0.023 | 265 | 284 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0054 | 265 | 282 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.95E-6 | 319 | 361 | No hit | No description |
SMART | SM00438 | 0.12 | 329 | 348 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.12 | 329 | 346 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 6.49E-10 | 377 | 425 | No hit | No description |
Pfam | PF01422 | 0.0051 | 381 | 405 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.014 | 387 | 406 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 9.6 | 445 | 456 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.37E-7 | 475 | 527 | No hit | No description |
SMART | SM00438 | 3.3E-5 | 485 | 504 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.2E-6 | 485 | 502 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.026 | 542 | 560 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 30 | 542 | 559 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 7.5 | 595 | 611 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0094 | 595 | 610 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
SDPKSPPSPS PSMSSSSTNR NGPRPRAAVS NRQEWVPRSS VPLNPPDRPQ TRPSRRSYAS 60 PSPANSDVTS VPQLVHEIQE KLSRGTVECM ICYDMVRRSA AMWSCPACFS IFHLHCIRKW 120 ARSPTSAADF TPASSGDWRC PGCQSPQSVP ASELVYTCFC GRRHDPPNDL YLTPHSCGEP 180 CGKPLDRAPL PPSDGRVNDV GDGEEGDFRC PHVCVLQCHP GPCPPCKAFA PRERCPCGKT 240 EIVRRCSERR APLSCGQQCN RLLTCGRHHC NQPCHTGSCG SCQELIIASC FCGKKTESVL 300 CGDMAVKGEF NGRNGLFSCN LPCDRSLSCG HHLCRENCHP GPCGDCELLP TKIKTCHCGK 360 MNLAGERKSC LDPIPTCSEV CGKPLVCKTH FCKIPCHEGN CPPCSVLVEQ RCRCGSSRQT 420 VECYKLFDET FTFICEKTCG RKKNCGRHRC SERCCPLSKT SSDQFSSGDW DPHFCSVPCG 480 KRLRCGNHTC QLLCHSGHCP PCLETIFTDL SCACGKTSIP PPIPCGTPTP SCRHLCLVPQ 540 PCGHPASHSC HFGDCPPCTI PMVKECIGGH VMLRNIPCGS KDIRCNQLCG KTRQCGIHAC 600 ARTCHPPPCD SSHAS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020595271.1 | 0.0 | NF-X1-type zinc finger protein NFXL1-like, partial | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A2I0WFE6 | 0.0 | A0A2I0WFE6_9ASPA; NF-X1-type zinc finger protein NFXL1 | ||||
STRING | XP_008789280.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6130 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |