PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_39184 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | SRS | ||||||||
Protein Properties | Length: 204aa MW: 21995.6 Da PI: 7.5544 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 111.4 | 1.3e-34 | 101 | 191 | 4 | 94 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssa 94 g+++CqdCGnqakkdC+h+RCRtCCk+rg+dC+th+kstWvpaa+rrer+ +++ +++ a s+ +a k++r l + q++++s + +s+ PEQU_39184 101 GSSTCQDCGNQAKKDCSHRRCRTCCKNRGYDCSTHIKSTWVPAARRRERHLTASDSAAAVAVSSsgIISALKKPRLL--SFQTTTTSHEYNSG 191 6789********************************************96554444444443332355666667665..44444444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 8.7E-32 | 102 | 187 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.6E-26 | 104 | 146 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
LNYGIAEMVG LRDVYVVAPA ASFHPPAAYH EQFLPSAEAH SIIPLLTASP YLADDDSRSS 60 MIHLWQSHPL PSLQAPALPQ NPNPSPSPEL ESPDILFVTG GSSTCQDCGN QAKKDCSHRR 120 CRTCCKNRGY DCSTHIKSTW VPAARRRERH LTASDSAAAV AVSSSGIISA LKKPRLLSFQ 180 TTTTSHEYNS GTLPLSSETG SSHQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020597847.1 | 1e-144 | protein LATERAL ROOT PRIMORDIUM 1-like, partial | ||||
TrEMBL | A0A2I0WD09 | 2e-77 | A0A2I0WD09_9ASPA; Uncharacterized protein | ||||
STRING | XP_008803345.1 | 5e-53 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3579 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.3 | 1e-29 | Lateral root primordium (LRP) protein-related |