PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_39105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GRAS | ||||||||
Protein Properties | Length: 231aa MW: 25826.4 Da PI: 8.9876 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 239.2 | 1.7e-73 | 2 | 228 | 138 | 373 |
GRAS 138 gppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235 +pps+RiTg gs + +l++t++rL++fA++l++pf+f++l++ + + +++++++ pgE+laVn+vl lh+ll++++ + +++L+ v+ l+ PEQU_39105 2 NPPSIRITGTGS----DLSTLRRTAHRLHSFASSLQLPFQFHPLLVPpSSQPSSTNAFHLCPGETLAVNCVLFLHNLLKSDGFRDA--HSFLRSVRALN 94 69**********....9**************************97765888889************************88888887..9********** PP GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 P vv+++e+ea h+s+sF +rf++ale+y+a+f+slea+lp++s+er+ vEr+++grei vv+ + +he++e+W+e++++aGF v+ls++a PEQU_39105 95 PVVVTLAEHEAGHSSPSFKDRFTKALEHYTAVFESLEATLPPTSRERMAVERVWFGREIAGVVSGDE-----KHERFERWEEMMRAAGFAGVNLSSFAI 188 ***************************************************************8654.....57************************* PP GRAS 335 kqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +qa+lllr ++ +gy+++ +gs +lgW+++pL+svS+W PEQU_39105 189 SQARLLLRLHYpAEGYKLQVVRGSCFLGWQNKPLFSVSSW 228 **************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 32.813 | 1 | 208 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.0E-71 | 2 | 228 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
ANPPSIRITG TGSDLSTLRR TAHRLHSFAS SLQLPFQFHP LLVPPSSQPS STNAFHLCPG 60 ETLAVNCVLF LHNLLKSDGF RDAHSFLRSV RALNPVVVTL AEHEAGHSSP SFKDRFTKAL 120 EHYTAVFESL EATLPPTSRE RMAVERVWFG REIAGVVSGD EKHERFERWE EMMRAAGFAG 180 VNLSSFAISQ ARLLLRLHYP AEGYKLQVVR GSCFLGWQNK PLFSVSSWHC N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-34 | 2 | 229 | 138 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020595277.1 | 1e-170 | scarecrow-like protein 18, partial | ||||
Swissprot | Q9ZWC5 | 1e-78 | SCL18_ARATH; Scarecrow-like protein 18 | ||||
TrEMBL | A0A2I0WBM1 | 1e-139 | A0A2I0WBM1_9ASPA; Scarecrow-like protein 18 | ||||
STRING | GSMUA_Achr1P19470_001 | 1e-101 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3653 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 2e-78 | GRAS family protein |
Publications ? help Back to Top | |||
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