PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_39053
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 489aa    MW: 54290.4 Da    PI: 6.1243
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_39053genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.44.9e-1371194891374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L +cA a+ +++++ a++l+a+l++++s +g+p++Rl ay++e+L arl++s+s +ykal+++e +   sse l+++++++ev+P++kf+++ aN
  PEQU_39053 119 LRQVLAACAYAIGENNFTTAKWLIAELKQMVSVSGEPIERLGAYLLEGLVARLSSSGSLIYKALKCREPT---SSEFLSYMHILYEVCPYFKFGYMSAN 214
                 6899*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI eav++e+r+HiiD++i qG+QW++L+qaLasRp+gpp++R+Tg++++ +   +   le +g+rL+++Ae+++vpfef++ +a +  ++ele+L +
  PEQU_39053 215 GAIAEAVKNEDRIHIIDLQIAQGTQWVTLIQALASRPGGPPHVRVTGFDDSLNAyaRGGGLEIVGQRLSRLAESCRVPFEFHP-AAMSGCEIELEDLGI 312
                 **************************************************877788999************************.899999********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVnl++qlh+++desvs++++rd++L++vksl P+vv++veqe++ n++ F+ rf+e+l+yy+a+f+s++++lpre++eri+vE+++l+r+iv
  PEQU_39053 313 RPGEALAVNLAFQLHHIPDESVSTTNHRDRLLRFVKSLAPTVVTLVEQESNANTAAFFPRFIETLDYYTAIFESIDVTLPRENKERINVEQQCLARDIV 411
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++aceg+er+erhe  +kW++r+++aGF ++pls+ ++ ++k+ll +++++ y++ee +g+l+lgW++r+Lv+ SaWr
  PEQU_39053 412 NIIACEGKERVERHEVHGKWKARFRMAGFAQYPLSSLVNGTIKSLLGNYSDK-YSLEEVDGALYLGWRHRALVVSSAWR 489
                 **************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.24893470IPR005202Transcription factor GRAS
PfamPF035141.7E-134119489IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MHLKQISPNH LPPNNKSSLN ESQMRNSSPQ SSNLRYCTLE SSSAVATHTH SSPSTSSFSS  60
STESHSDAAS ESPVSASCLT EDLNDKLREL ESAMLGPELV VLESFDTFKI QMEIPNRDLR  120
QVLAACAYAI GENNFTTAKW LIAELKQMVS VSGEPIERLG AYLLEGLVAR LSSSGSLIYK  180
ALKCREPTSS EFLSYMHILY EVCPYFKFGY MSANGAIAEA VKNEDRIHII DLQIAQGTQW  240
VTLIQALASR PGGPPHVRVT GFDDSLNAYA RGGGLEIVGQ RLSRLAESCR VPFEFHPAAM  300
SGCEIELEDL GIRPGEALAV NLAFQLHHIP DESVSTTNHR DRLLRFVKSL APTVVTLVEQ  360
ESNANTAAFF PRFIETLDYY TAIFESIDVT LPRENKERIN VEQQCLARDI VNIIACEGKE  420
RVERHEVHGK WKARFRMAGF AQYPLSSLVN GTIKSLLGNY SDKYSLEEVD GALYLGWRHR  480
ALVVSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6812648826378Protein SCARECROW
5b3h_A4e-6812648825377Protein SCARECROW
5b3h_D4e-6812648825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020590644.10.0scarecrow-like protein 21
RefseqXP_020595376.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A3G2CI250.0A0A3G2CI25_CYMEN; Scarecrow-like protein 21-like transcript variant X1
STRINGXP_008800637.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]