PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_38704
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HSF
Protein Properties Length: 470aa    MW: 52585.4 Da    PI: 4.9606
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_38704genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35251152101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d+++++++sw+++++sfvv+++ ef++++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F kg+k++l++i+
    PEQU_38704  25 FLVKTYDMVDDSSTDDIVSWTATKTSFVVWNPPEFSSRLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANDEFVKGQKHKLKNIH 112
                   9********************999*****************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    PEQU_38704 113 RRK 115
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-3721114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.83E-3421114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-182548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.8E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEPTTSTVDA VAGGSSAGAG GPAPFLVKTY DMVDDSSTDD IVSWTATKTS FVVWNPPEFS  60
SRLLPTYFKH NNFSSFIRQL NTYGFRKIDP ERWEFANDEF VKGQKHKLKN IHRRKPIHSH  120
SNPPHGSADA ERTALEEEIE RLQREKAALQ ANLWRFKQQQ SGTKIQLEDI ERRLLDMEQR  180
QEKMVSFLQR AVQNPKFVEN LVMMGGSSAS ALHKKRRHPG VECCPEVGDN SFCENSCSNS  240
KPTEVGNVFS QDFCDKLRLE LSPAFSESNL VSPSNQGSNE GYRSPQVRPT DDDCPLRMEC  300
LQLVPETLEL SDTGASFCPR KNSLLSDDGD GLISCHLKLS LSSSSMHMDS STNLSRIPSL  360
VDLGVTNGYT GDDSTRISGQ NKNADQVLTD TEAPTFREVS QAGKPASLPA NVRVNDKFWE  420
QFLTERPGYS DTEEASSSLR DDPCEDPQEE RMAERENNLR SIKDMEQLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-21811412129Heat shock factor protein 1
5d5v_B7e-21811412129Heat shock factor protein 1
5d5v_D7e-21811412129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020597226.10.0heat stress transcription factor A-5
SwissprotQ6K6S51e-152HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A2I0WPI60.0A0A2I0WPI6_9ASPA; Heat stress transcription factor A-5
STRINGXP_008813276.11e-179(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-125HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]