PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_38579 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 172aa MW: 20382.3 Da PI: 5.4484 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.9 | 2.7e-23 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien ++rq tf kRr g++KKA EL vLCda+ ++++fss+gkly y PEQU_38579 9 KRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSSSGKLYHYH 58 79**********************************************96 PP | |||||||
2 | K-box | 22.3 | 5.5e-09 | 88 | 150 | 20 | 82 |
K-box 20 elakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 +++ ++k e L+re+R + +Ge+ e+ ++ L+ +eq+Le ++kk+R+ K++ + +++e l + PEQU_38579 88 KVEEMEKMCEFLEREIRFMrIGEE-EEYTFPVLEVIEQNLEAAIKKVREEKDRKIQAEMESLHR 150 678899999999999997625666.999*******************************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.002 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-28 | 3 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.8E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.34 | 82 | 172 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.3E-7 | 87 | 150 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 172 aa Download sequence Send to blast |
MARGRLEIKR IENPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSS SGKLYHYHSP 60 SVSNVQELLR RYEVASRTRI PTDQGGEKVE EMEKMCEFLE REIRFMRIGE EEEYTFPVLE 120 VIEQNLEAAI KKVREEKDRK IQAEMESLHR MVCSAPDFSS YFDFFFVDGF DF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-14 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 4e-14 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 4e-14 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 4e-14 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020596715.1 | 1e-105 | MADS-box transcription factor 32-like | ||||
Swissprot | Q8S151 | 8e-60 | MAD32_ORYSJ; MADS-box transcription factor 32 | ||||
TrEMBL | A0A2I0VHD8 | 6e-87 | A0A2I0VHD8_9ASPA; MADS-box transcription factor 32 | ||||
STRING | XP_008812160.1 | 2e-61 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11923 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G30260.1 | 2e-19 | AGAMOUS-like 79 |
Publications ? help Back to Top | |||
---|---|---|---|
|