PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_38394
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 628aa    MW: 71266.4 Da    PI: 6.3896
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_38394genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.23.1e-1102586264374
        GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                 lL++cA+ v+sgd++ a++lL+++++++sp+gd+ qR+a+yf ++L+arla+++sely+++++ + +    +++l+ ++l+  ++P+ ++s+   Nq+I
  PEQU_38394 258 LLMDCAQTVASGDHKTAHELLKQIRHHSSPHGDASQRVAHYFCNGLEARLAGTGSELYQSMASVRRT---LADVLKGYQLYLSACPFKQVSYNFSNQTI 353
                 89***********************************************************999998...9**************************** PP

        GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                 l+a+++++rvHi+D++   G+QWpa+l+ L+sR++gpp+lRiT+v++p +g   +e +eetg+r+a +Ae++gvpfe+++ va++l++l++e+L+++++
  PEQU_38394 354 LDAIKSSTRVHILDIGTFLGFQWPAFLKMLSSRNGGPPKLRITAVDKPMPGfrPAELIEETGRRIACYAERFGVPFEYQA-VASKLDELKVEDLHLDEE 451
                 *************************************************9999999************************.7***************** PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 E l+Vn+ +qlh+l de++ ++  rd++L+++++ +P +++ +  + +++++ Fl+rf eal+++sa+fd++e+++pre+e+r  vEr l +r++ nv+
  PEQU_38394 452 EILVVNCLFQLHSLGDETMGVDCSRDKFLRTIRKFNPALFISATGNGSYGAPFFLTRFREALYHFSAIFDMIEMTAPRENEQRLLVERDLYARDAINVI 550
                 *************************************************************************************************** PP

        GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 aceg er+e  et+++ ++r+ +aGF+++p+++k a+++k  +++++ + ++++ ++++l++gW++r  +++S W+
  PEQU_38394 551 ACEGMERTELPETYKQYQMRFLRAGFQQLPINKKHANKVKDGVKTYYHKDFSIDVDDQWLLQGWRGRIFIALSTWK 626
                 ***********************************************889*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.754229606IPR005202Transcription factor GRAS
PfamPF035141.1E-107258626IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MLMEEDMDDK LDLLESHPAL EATERPFYDI IGEKYPPDRS LLYSSPSSGS SGGQHYNSNC  60
IAGANDFTDN DPSYAEFSEF LHSHLSFTQS SVNSIYDDAG LQFGLDDLSN LFFEENPASH  120
FEKGPKEADK FFPSKDKLFV KVSAEDSACT KVNAKDGTGR RLKSRHHDDG FDMKEQRSAK  180
QSAVSFEEPP VSPEMLDRVL LSTAENFPKV VRSIREAIKN EAASKNSSEI AEPRKYGESQ  240
NFRKKKQPNK EVVDFQVLLM DCAQTVASGD HKTAHELLKQ IRHHSSPHGD ASQRVAHYFC  300
NGLEARLAGT GSELYQSMAS VRRTLADVLK GYQLYLSACP FKQVSYNFSN QTILDAIKSS  360
TRVHILDIGT FLGFQWPAFL KMLSSRNGGP PKLRITAVDK PMPGFRPAEL IEETGRRIAC  420
YAERFGVPFE YQAVASKLDE LKVEDLHLDE EEILVVNCLF QLHSLGDETM GVDCSRDKFL  480
RTIRKFNPAL FISATGNGSY GAPFFLTRFR EALYHFSAIF DMIEMTAPRE NEQRLLVERD  540
LYARDAINVI ACEGMERTEL PETYKQYQMR FLRAGFQQLP INKKHANKVK DGVKTYYHKD  600
FSIDVDDQWL LQGWRGRIFI ALSTWKPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-482376281380Protein SCARECROW
5b3h_D7e-482376281380Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020599531.10.0scarecrow-like protein 9 isoform X2
TrEMBLA0A3G2CI190.0A0A3G2CI19_CYMEN; Scarecrow-like protein 9-like transcript variant X1
STRINGXP_008784606.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-161GRAS family protein