PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_38389

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 442aa MW: 50392.9 Da PI: 6.9452

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_38389	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	161	180	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 y C+ Cg+ ++++ +LkrH PEQU_38389 161 YICGVCGRKCRTNPELKRHF 180 89*****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	3.2E-6	81	151	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.076	161	189	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	163	184	IPR007087	Zinc finger, C2H2
CDD	cd06167	5.59E-11	227	315	No hit	No description
Gene3D	G3DSA:3.40.50.1010	3.2E-6	246	312	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MNPLCTRFQH ATLPPFSVRS PHPKSPLFGR RIRPSVLFPY LSSLPFSDVA PRLIATRSAR 60 VPSPNADIEM VRGRDGSWSA REQNVVVLWD LDNKPPRGQP YDAAVALRRV AELFGRVVEI 120 SAYANRHAFL HLPQWVLENR RERRLLDGLE RKGLVVPSQP YICGVCGRKC RTNPELKRHF 180 IQLHERERQK KLSRMRSLKG KKRENYKKRF ISGNHKYTEA ARELLIPNKG YGLASELRRA 240 GVFVKTVEDK PQAADSAVKR QMQHSMSRGI DCLFLVSDDS DFSEMIRKSR EANLRTVVIG 300 DARRALGRLA DFWVPWMRVE REEVGEEVLL SARNTGFRIG EEDEDEEQGL FYSSAIFYDN 360 DDDDGKGDEA DGDLDQLVDE VVGECSGFNA VKVSAFSEEE LSDGKNMRPE TWNSISEMLG 420 ATVAGRSLSW NIDDEDEDDY YI

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MNPLCTRFQH ATLPPFSVRS PHPKSPLFGR RIRPSVLFPY LSSLPFSDVA PRLIATRSAR  60
VPSPNADIEM VRGRDGSWSA REQNVVVLWD LDNKPPRGQP YDAAVALRRV AELFGRVVEI  120
SAYANRHAFL HLPQWVLENR RERRLLDGLE RKGLVVPSQP YICGVCGRKC RTNPELKRHF  180
IQLHERERQK KLSRMRSLKG KKRENYKKRF ISGNHKYTEA ARELLIPNKG YGLASELRRA  240
GVFVKTVEDK PQAADSAVKR QMQHSMSRGI DCLFLVSDDS DFSEMIRKSR EANLRTVVIG  300
DARRALGRLA DFWVPWMRVE REEVGEEVLL SARNTGFRIG EEDEDEEQGL FYSSAIFYDN  360
DDDDGKGDEA DGDLDQLVDE VVGECSGFNA VKVSAFSEEE LSDGKNMRPE TWNSISEMLG  420
ATVAGRSLSW NIDDEDEDDY YI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020596894.1	0.0	uncharacterized protein LOC110036723
TrEMBL	A0A2I0W7Z5	0.0	A0A2I0W7Z5_9ASPA; Uncharacterized protein
STRING	XP_008776526.1	1e-163	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9806	32	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-125	C2H2-like zinc finger protein