PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_37625
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 278aa    MW: 31183 Da    PI: 9.2178
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_37625genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.3e-1195137246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++ Ed  +  +++  G++ W+ Ia+ ++ gRt++++k++w++
       PEQU_37625  95 GEFSEAEDNTICTLFASIGSR-WSIIASQLP-GRTDNDIKNYWNT 137
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-5844IPR009057Homeodomain-like
PROSITE profilePS500909.303988IPR017877Myb-like domain
SMARTSM007171.1E-71390IPR001005SANT/Myb domain
PfamPF002491.9E-51446IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-201595IPR009057Homeodomain-like
CDDcd001676.23E-51688No hitNo description
SuperFamilySSF466895.79E-2074144IPR009057Homeodomain-like
PROSITE profilePS5129420.91489143IPR017930Myb domain
SMARTSM007174.2E-1193141IPR001005SANT/Myb domain
PfamPF002491.6E-1095137IPR001005SANT/Myb domain
CDDcd001671.63E-796139No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2296143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRAPCCDKA KVKKGPWSAE EDSKLKEFIE KNGTGGNWIA LPHKAGSLFS STLPSFSLSF  60
SLSLNNLWTL IGLRRCGKSC RLRWLNYLRP NIKHGEFSEA EDNTICTLFA SIGSRWSIIA  120
SQLPGRTDND IKNYWNTKLK KKLLGISSSQ KRSSLHQQQR SQQLFFSSPS PCLTSNPYIN  180
NSVTPTLFQK DSFGCFNHQA NLAPISSKVF SAPSSSSSSS SSFFQNTSFN NLMLYGNTSF  240
QEFDGIPNST PLEEYSVYGF EDIKKMLTNS NNEFYFED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-22141437108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020598230.11e-176transcription factor RAX2-like
SwissprotQ9SJL74e-67RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A2I0XAS31e-107A0A2I0XAS3_9ASPA; Transcription factor RAX2
STRINGXP_009780529.16e-75(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.14e-63MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]