PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_37625 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 278aa MW: 31183 Da PI: 9.2178 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.5 | 2.3e-11 | 95 | 137 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++ Ed + +++ G++ W+ Ia+ ++ gRt++++k++w++ PEQU_37625 95 GEFSEAEDNTICTLFASIGSR-WSIIASQLP-GRTDNDIKNYWNT 137 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.48E-5 | 8 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 9.303 | 9 | 88 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.1E-7 | 13 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-5 | 14 | 46 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-20 | 15 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.23E-5 | 16 | 88 | No hit | No description |
SuperFamily | SSF46689 | 5.79E-20 | 74 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.914 | 89 | 143 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-11 | 93 | 141 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-10 | 95 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.63E-7 | 96 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 96 | 143 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 278 aa Download sequence Send to blast |
MGRAPCCDKA KVKKGPWSAE EDSKLKEFIE KNGTGGNWIA LPHKAGSLFS STLPSFSLSF 60 SLSLNNLWTL IGLRRCGKSC RLRWLNYLRP NIKHGEFSEA EDNTICTLFA SIGSRWSIIA 120 SQLPGRTDND IKNYWNTKLK KKLLGISSSQ KRSSLHQQQR SQQLFFSSPS PCLTSNPYIN 180 NSVTPTLFQK DSFGCFNHQA NLAPISSKVF SAPSSSSSSS SSFFQNTSFN NLMLYGNTSF 240 QEFDGIPNST PLEEYSVYGF EDIKKMLTNS NNEFYFED |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-22 | 14 | 143 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020598230.1 | 1e-176 | transcription factor RAX2-like | ||||
Swissprot | Q9SJL7 | 4e-67 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A2I0XAS3 | 1e-107 | A0A2I0XAS3_9ASPA; Transcription factor RAX2 | ||||
STRING | XP_009780529.1 | 6e-75 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36890.1 | 4e-63 | MYB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|