PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_36948

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB_related

Protein Properties

Length: 428aa MW: 47305.8 Da PI: 4.7268

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_36948	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.2	4.3e-09	2	30	16	46
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqk 46 + ++G++ W++ a+ ++ gRt++++k++w++ PEQU_36948 2 HSKMGNR-WARMAALLP-GRTDNEIKNYWNT 30 7899*.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-14	1	33	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.953	1	36	IPR017930	Myb domain
CDD	cd00167	2.38E-6	1	30	No hit	No description
Pfam	PF00249	3.1E-7	2	30	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.97E-7	2	35	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MHSKMGNRWA RMAALLPGRT DNEIKNYWNT RIKRRSRAGL PLYPTKVSFQ TSNDDQPIQS 60 SSELSSSDQQ NIEVLTETIN GTPEFRYRPY KANPAPVSYP PLFPDNPVTG IPRHGLGYYT 120 RSFLNSGGNH VKLAWESETC SPVYHLLHSS MIPAFELSNM NAETNHLNSG LVYPYDPDPE 180 CKNLAPFICS VPGNPALSNG NLSSSRLLPG AVKMELPSLQ YPEPDYIDWN TSSLFASSSD 240 AVDTYIQSPE NISVQSDCAS PRNKGLLQDL VLESQAISTG KKQSFETSLD HAVASMTGTT 300 AVKWEEEIRD PTSPFCLSAV SLFNECNPTI TTTFNERSTC ETPTEATMLG EEQDKYAPNL 360 PDFLRPDVLL GSGWFIGNSR NTSEFIAAPS GESLREERVL LPAGLSSTVS LESYPWTNMP 420 PVCQMSEH

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MHSKMGNRWA RMAALLPGRT DNEIKNYWNT RIKRRSRAGL PLYPTKVSFQ TSNDDQPIQS  60
SSELSSSDQQ NIEVLTETIN GTPEFRYRPY KANPAPVSYP PLFPDNPVTG IPRHGLGYYT  120
RSFLNSGGNH VKLAWESETC SPVYHLLHSS MIPAFELSNM NAETNHLNSG LVYPYDPDPE  180
CKNLAPFICS VPGNPALSNG NLSSSRLLPG AVKMELPSLQ YPEPDYIDWN TSSLFASSSD  240
AVDTYIQSPE NISVQSDCAS PRNKGLLQDL VLESQAISTG KKQSFETSLD HAVASMTGTT  300
AVKWEEEIRD PTSPFCLSAV SLFNECNPTI TTTFNERSTC ETPTEATMLG EEQDKYAPNL  360
PDFLRPDVLL GSGWFIGNSR NTSEFIAAPS GESLREERVL LPAGLSSTVS LESYPWTNMP  420
PVCQMSEH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020583216.1	0.0	transcription factor GAMYB-like
Refseq	XP_020583217.1	0.0	transcription factor GAMYB-like
Refseq	XP_020583218.1	0.0	transcription factor GAMYB-like
TrEMBL	A0A455LAC9	0.0	A0A455LAC9_9ASPA; Transcription factor GAMYB-like protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3947	36	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	6e-22	myb domain protein 33