PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_36904
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 276aa    MW: 31561.8 Da    PI: 10.9467
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_36904genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-1774119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+q+G+++W++Ia+ +  gR++k+c++rw++ 
       PEQU_36904  74 RGHWRPAEDAKLKELVTQFGPKNWNLIAENLE-GRSGKSCRLRWFNQ 119
                      899*****************************.***********996 PP
2Myb_DNA-binding57.82.5e-18126169146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++T eE+e+lv +++ +G++ W++Iar ++ gRt++ +k++w+ 
       PEQU_36904 126 RKAFTSEEEERLVSVHHHYGNK-WSLIARFFP-GRTDNAVKNHWHV 169
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.60569120IPR017930Myb domain
SMARTSM007172.6E-1473122IPR001005SANT/Myb domain
PfamPF002491.6E-1574119IPR001005SANT/Myb domain
SuperFamilySSF466892.13E-2874167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-2675127IPR009057Homeodomain-like
CDDcd001671.30E-1277118No hitNo description
PROSITE profilePS5129425.669121175IPR017930Myb domain
SMARTSM007172.6E-14125173IPR001005SANT/Myb domain
PfamPF002492.1E-15126168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-21128174IPR009057Homeodomain-like
CDDcd001671.48E-10128168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSPRQQRSEA PMLFLSSPQQ QPSFLTSAVC PLEREFIRSK KSWTFSAGHD DLQLSDGSKE  60
SRDPGTKRFK LCTRGHWRPA EDAKLKELVT QFGPKNWNLI AENLEGRSGK SCRLRWFNQL  120
NPRINRKAFT SEEEERLVSV HHHYGNKWSL IARFFPGRTD NAVKNHWHVI MARKKRDHST  180
SCRRRRLTSS ASLNPSHLHK MERNTISGES TITSTGEDSL SIATNRSTVH GLLLSTRQKE  240
GIKAYATESA TIRKAEIVRE RINLPFFDFM GVGAAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-31711741104C-Myb DNA-Binding Domain
1msf_C3e-31711741104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020599062.10.0transcription factor MYB56-like
SwissprotQ9SEZ42e-65MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2I0WG691e-142A0A2I0WG69_9ASPA; Transcription factor MYB44
STRINGevm.model.supercontig_73.43e-72(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.17e-61myb domain protein 56
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]