PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_36147
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARF
Protein Properties Length: 391aa    MW: 44692 Da    PI: 7.6256
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_36147genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.55.2e-23111211198
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 f+k+lt sd++++g +++ +++a+++     +++++ +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +vF   + +++el+v
  PEQU_36147 111 FCKILTASDTSTHGGFSVLRRHANDCippldMSQPTPTQELSATDLHGFEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLVAGDAFVFL--RGENRELRV 207
                 99*********************999*****77777888*************************************************..348999999 PP

                 EEE- CS
          B3  95 kvfr 98 
                 +v r
  PEQU_36147 208 GVKR 211
                 9865 PP
2Auxin_resp103.33e-34237316183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha+ t+++F+v+Y+Pr+  s+F++ v+k+++a+++ +s+GmRfkm+fe+ed++e+r++Gt+vgv dl++ +W++SkWr++k
  PEQU_36147 237 ASHAVMTQTMFTVCYKPRT--SQFIIGVNKYLEAINNGFSLGMRFKMRFEGEDVPEKRYTGTIVGVGDLSS-QWEGSKWRQMK 316
                 689***************6..9**********************************************777.********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.47E-39103240IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-37106225IPR015300DNA-binding pseudobarrel domain
CDDcd100179.69E-19109211No hitNo description
PfamPF023625.4E-21111211IPR003340B3 DNA binding domain
PROSITE profilePS5086311.533111213IPR003340B3 DNA binding domain
SMARTSM010191.0E-20111213IPR003340B3 DNA binding domain
PfamPF065077.6E-32237316IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGEDDLYEEL WRACAGPLVE IPRVGERVYY FPQGHMEQLE ASTNQELDQR IPFFPLPSKI  60
LCRVLNIELR AEAETDEVYA QIALLPESDQ TEPKTTDQCS PEPERPVVHS FCKILTASDT  120
STHGGFSVLR RHANDCIPPL DMSQPTPTQE LSATDLHGFE WRFKHIYRGQ PRRHLLTTGW  180
STFVTSKKLV AGDAFVFLRG ENRELRVGVK RLARHKSTIP SSVISRHSMH LGVLATASHA  240
VMTQTMFTVC YKPRTSQFII GVNKYLEAIN NGFSLGMRFK MRFEGEDVPE KRYTGTIVGV  300
GDLSSQWEGS KWRQMKVQWD ELVNFQRPER LSPWEIEPYS SSTPTPTVPQ SLFTSNKRPK  360
LSMGLSDHPN FGSEYVFRMF SSIISLIFWK I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-176434117357Auxin response factor 1
4ldw_A1e-176434117357Auxin response factor 1
4ldw_B1e-176434117357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020595729.10.0auxin response factor 9-like
SwissprotQ9ZPY60.0ARFK_ARATH; Auxin response factor 11
TrEMBLA0A2I0WQD60.0A0A2I0WQD6_9ASPA; Auxin response factor
STRINGXP_010266558.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]