PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_35640

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Trihelix

Protein Properties

Length: 265aa MW: 30246.9 Da PI: 10.9934

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_35640	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.6	9.3e-20	7	100	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 +W+++e+laLie +r+++++lrr++l++++W+ev++ + ++++qC++k+e+l+kr++ + ++ +++ +st+p+f +e PEQU_35640 7 CWSHEETLALIESYRNKWHSLRRANLRAADWDEVAADLsrtsshLPSATPKTSVQCRHKIEKLRKRFRSDRLRSLTLrpHAPPTSTWPFFPLME 100 8***********************************988887778889**************87755433313456667***9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.5E-17	6	102	No hit	No description
SMART	SM00595	9.8E-4	15	107	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
RGLPPPCWSH EETLALIESY RNKWHSLRRA NLRAADWDEV AADLSRTSSH LPSATPKTSV 60 QCRHKIEKLR KRFRSDRLRS LTLRPHAPPT STWPFFPLME SLECPPPASL SGSTSHSDDA 120 DNSRNIHRRL LSNGEGLRFT IPKAVRSKIV NPSSGGGKLK TEFFDIGVKP AKEQMRRRLE 180 RKRKEEMEQG TLGGMVAALR MVGDGFMRME RVKMDVVRET EKMRMEMELK RTQMILDSQQ 240 RIVDAFVEGF IGGVKRKKAK ISPDS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020595592.1	1e-150	uncharacterized protein LOC110035665
TrEMBL	A0A2I0X1X0	1e-148	A0A2I0X1X0_9ASPA; Uncharacterized protein
STRING	XP_008794930.1	2e-76	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5689	32	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-28	Trihelix family protein