PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_35378
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 540aa    MW: 60208.4 Da    PI: 6.5883
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_35378genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.91.1e-1351715392373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++ L++cA+av+++dl +a+ l+++l++++s +g+p+qRl ay++e+L arl +++s++ykal+++e +   s+e l+++++++ev+P++kf+++ aN 
  PEQU_35378 171 KQGLIACARAVADDDLLMADLLITELKQMVSVSGEPIQRLGAYLLEGLIARLESTGSSIYKALKCKEPT---SAELLSYMHILYEVCPYFKFGYFSANG 266
                 688*****************************************************************9...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 aI ea++ge++vHiiDf+i qG QW++L+qaLa+Rp+gpp++RiTg++++ s+  +   l+ +g+rL+++Ae+++vpfef++ +     ++++e+L+v 
  PEQU_35378 267 AIAEALKGENAVHIIDFQIAQGSQWISLIQALAARPGGPPRVRITGIDDSISEyaRGGGLHLVGQRLSHLAESCNVPFEFHA-APLLGGNVQVEHLSVC 364
                 *************************************************877788999************************.88899*********** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 pgEalaVn+++qlh+++desvs+e++rd++L++vkslsPkvv++veqe+++n+++F++rfle+l+yy+a+f+s++a lpr+++eri+vE+++l+r+ivn
  PEQU_35378 365 PGEALAVNFAYQLHHMPDESVSTENHRDRILRMVKSLSPKVVTLVEQESNTNTAPFFQRFLETLDYYTAIFESIDAVLPRDHKERISVEQHCLARDIVN 463
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 v+acegaer+erhe l+kW+ r+++aGF+p pls ++++++k+ll ++  d y++e+++g+l+lgWk+r L + +aW
  PEQU_35378 464 VIACEGAERVERHELLGKWKYRFRMAGFTPFPLSPFVNATIKSLLGNYC-DHYKLEDRDGALYLGWKNRVLSVSCAW 539
                 ************************************************9.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.26144521IPR005202Transcription factor GRAS
PfamPF035143.8E-133171539IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MSMQASKKYK NSDKAQQFYH MKSSKPAREA ESHYPPQNHQ LADHLSSNNA SRSRNLPHQQ  60
SGMQYCTLES SSVAARNEIQ QSSCISLTST TGSSPTSQHD SLSDNTYGSP ASVSCITEDP  120
YDLKHKLREL ETAMFGPEMG NGDSFETVFK KQLLLEPEKW KLLEIVRGDL KQGLIACARA  180
VADDDLLMAD LLITELKQMV SVSGEPIQRL GAYLLEGLIA RLESTGSSIY KALKCKEPTS  240
AELLSYMHIL YEVCPYFKFG YFSANGAIAE ALKGENAVHI IDFQIAQGSQ WISLIQALAA  300
RPGGPPRVRI TGIDDSISEY ARGGGLHLVG QRLSHLAESC NVPFEFHAAP LLGGNVQVEH  360
LSVCPGEALA VNFAYQLHHM PDESVSTENH RDRILRMVKS LSPKVVTLVE QESNTNTAPF  420
FQRFLETLDY YTAIFESIDA VLPRDHKERI SVEQHCLARD IVNVIACEGA ERVERHELLG  480
KWKYRFRMAG FTPFPLSPFV NATIKSLLGN YCDHYKLEDR DGALYLGWKN RVLSVSCAWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6517753926378Protein SCARECROW
5b3h_A9e-6517753925377Protein SCARECROW
5b3h_D9e-6517753925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020594065.10.0scarecrow-like transcription factor PAT1
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A2I0VMZ90.0A0A2I0VMZ9_9ASPA; Chitin-inducible gibberellin-responsive protein 2
STRINGXP_008800637.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]