PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_34364

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

G2-like

Protein Properties

Length: 281aa MW: 31418.9 Da PI: 6.8662

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_34364	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.8	4.9e-33	30	84	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rF +av+qLGG+ekAtPkti++lm++kgLtl+h+kSHLQkYR+ PEQU_34364 30 KPRLRWTVELHDRFTDAVAQLGGPEKATPKTIMRLMNIKGLTLYHLKSHLQKYRM 84 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.965	27	87	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-31	27	85	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-16	30	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-23	30	85	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-8	32	83	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-22	125	168	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MYIKGGEFVG SIEGAKLPVD ANLVLTSDPK PRLRWTVELH DRFTDAVAQL GGPEKATPKT 60 IMRLMNIKGL TLYHLKSHLQ KYRMGKQSLK ELENTNDASG VLESRGSKTS TASTQVTQEF 120 NDGCNEAMRV QMELQRRLHE QLEVQKSLQL RIEAQEKYLQ SFLDRACNAL VDPNLTEIGF 180 DAIKQQFTEL SNRNINGGIK YEPVKLPSLS ENARVFAEDK PWAGLEQITE HSVDSCLTSA 240 GSPSAFCSKL SLKKRLHPML CNGNLEVGVA VHEDDLWMCS I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020585310.1	0.0	protein PHR1-LIKE 2-like
Swissprot	Q94A57	9e-77	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2I0B2S4	1e-106	A0A2I0B2S4_9ASPA; Myb family transcription factor APL
STRING	XP_010241363.1	3e-91	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP29411	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	4e-79	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]