PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_33998
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family Trihelix
Protein Properties Length: 354aa    MW: 40158.2 Da    PI: 6.9434
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_33998genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.18.5e-272895269
    trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69
                W ++e+l+Li++rrem++ ++++k++k+lWe++s+kmre+gfersp++C++kw+nl k+ykk k++++
  PEQU_33998 28 WVQEETLCLIALRREMDRLFNTSKSNKHLWEQISAKMREKGFERSPTMCTDKWRNLLKEYKKAKHHSR 95
                ****************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.5482084IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.0E-52086IPR009057Homeodomain-like
SMARTSM007171.0E-52486IPR001005SANT/Myb domain
CDDcd122031.78E-282691No hitNo description
PfamPF138371.3E-192798No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MTMSESSCGD DHEARTHGPN PKKRAETWVQ EETLCLIALR REMDRLFNTS KSNKHLWEQI  60
SAKMREKGFE RSPTMCTDKW RNLLKEYKKA KHHSRVSGGT GGGGGGGLAK TACFKELEEL  120
LKERGHKNLA CKGCVSLKRV DSFLQFAEKG LEDVNLLFGP TEATGRSVLH QDRHLDHERD  180
SLAITAVDTV TPNGIPPWNW KDNSANGEDN HSSYVGRVIL VKFGEYSRKI GIDGTSESIK  240
EAIKAAFGLR TRRAFWLEDE DEVVRSLDRD MPLGTYTVHL DEGVTFKFCV YDESDRLSVR  300
TEEKTLYTQE DFHEFLTRRC WTSLREINSL RTADTLDDLQ PGAVYQGLPV TRAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-3922116186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020588283.10.0trihelix transcription factor GT-1-like isoform X1
SwissprotQ9FX531e-142TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A2I0WL260.0A0A2I0WL26_9ASPA; Trihelix transcription factor GT-1
STRINGXP_008792161.11e-168(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-143Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]