PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_33900

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 297aa MW: 33538.3 Da PI: 7.5432

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_33900	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174	4.5e-54	11	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhP+d+elv++yL++k++g++ +++ ++ +vd++k+ePw+Lp+ + + kewyfFs rd+kyatg+r+nrat+sgyWkatgkd++v++ k PEQU_33900 11 LPPGFRFHPRDDELVCDYLENKISGTEngtFHCCLMLVDVDLNKCEPWELPEIACVGGKEWYFFSLRDRKYATGQRTNRATESGYWKATGKDRPVMK-K 108 79*********************9955544445799*********7666689***********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g lvg++ktLvfy+grapkg+ktdWvmhe+r+ PEQU_33900 109 GVLVGMRKTLVFYEGRAPKGKKTDWVMHEFRI 140 99**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-61	2	164	IPR003441	NAC domain
PROSITE profile	PS51005	56.272	11	164	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	12	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MSALSMIEAR LPPGFRFHPR DDELVCDYLE NKISGTENGT FHCCLMLVDV DLNKCEPWEL 60 PEIACVGGKE WYFFSLRDRK YATGQRTNRA TESGYWKATG KDRPVMKKGV LVGMRKTLVF 120 YEGRAPKGKK TDWVMHEFRI ETNSKNSTNL STKEDWGLCR VFFKSRGTAP NLIETTVHHY 180 DHNASSSLPL MDTYITFDHA TGNHNQTQMS NLQGFHPVQH VPCFSNPLSM LTTTMSHLPV 240 PPMQSACQPP ADIDAFLMNP TCEIKVIKAV LSHLTMLEGG QKREASMSSG DGLQNNW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-49	8	165	12	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020596751.1	0.0	NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	2e-90	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A2I0VYV5	1e-128	A0A2I0VYV5_9ASPA; NAC domain-containing protein 21/22
STRING	XP_010258675.1	1e-105	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1012	37	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	7e-93	NAC domain containing protein 1

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]