PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_33827 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 129aa MW: 14833.1 Da PI: 10.1799 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1.1e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd +l+ +++q G+g +W ++++g++R++k+c++rw++yl PEQU_33827 14 KGQWSPEEDAKLKSYIEQNGTGgNWIPLPQKVGLKRCGKSCRLRWLNYL 62 799*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 44.4 | 3.9e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++++eE+ ++ ++ + G++ W++Ia+ ++ gRt++++k++w++ PEQU_33827 69 GSFSEEEENIICSLFVRIGSR-WSLIAAQLP-GRTDNDIKNYWNT 111 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.35 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.58E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.16E-7 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.065 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.12E-8 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MGRAPCCDKE KVKKGQWSPE EDAKLKSYIE QNGTGGNWIP LPQKVGLKRC GKSCRLRWLN 60 YLRPNLKHGS FSEEEENIIC SLFVRIGSRW SLIAAQLPGR TDNDIKNYWN TKLKKKLLST 120 YPSDHARVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-23 | 14 | 117 | 7 | 108 | B-MYB |
1h8a_C | 7e-23 | 11 | 117 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020593379.1 | 6e-85 | transcription factor RAX3-like | ||||
Swissprot | Q9M2Y9 | 1e-74 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A2C9US42 | 6e-74 | A0A2C9US42_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030696m | 1e-74 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 6e-77 | myb domain protein 84 |
Publications ? help Back to Top | |||
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