PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_33650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LSD | ||||||||
Protein Properties | Length: 183aa MW: 19395 Da PI: 8.7691 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.4 | 1.1e-13 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C++V PEQU_33650 27 CSGCRNLLLYPLGATSVCCAVCNAV 51 ************************9 PP | |||||||
2 | zf-LSD1 | 46 | 8.3e-15 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ PEQU_33650 66 CGGCHTLLMYIRGATSVQCSCCHTI 90 ***********************97 PP | |||||||
3 | zf-LSD1 | 41.4 | 2.4e-13 | 142 | 166 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V PEQU_33650 142 CGNCRMLLMYQYGARSVKCAVCNFV 166 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.4E-12 | 24 | 54 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.5E-11 | 27 | 51 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.90.10.10 | 4.3E-4 | 44 | 147 | No hit | No description |
TIGRFAMs | TIGR01053 | 1.5E-14 | 63 | 92 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-12 | 66 | 90 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.7E-11 | 139 | 169 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-12 | 142 | 166 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MPVPLAPYPS PPAPFTPPSG GQSQLVCSGC RNLLLYPLGA TSVCCAVCNA VTNVPPPGTE 60 MAQLVCGGCH TLLMYIRGAT SVQCSCCHTI NLALEGGKGL KLLEKLDPKV LKVLVRRGVK 120 LLMGVTTSTH APHTNQVAHV SCGNCRMLLM YQYGARSVKC AVCNFVTSVG VSIHLITRSF 180 TYF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026401599.1 | 7e-78 | protein LSD1 | ||||
Refseq | XP_026401600.1 | 7e-78 | protein LSD1 | ||||
Swissprot | Q0J7V9 | 3e-66 | LSD1_ORYSJ; Protein LSD1 | ||||
Swissprot | Q93ZB1 | 2e-66 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A2G5CN89 | 1e-76 | A0A2G5CN89_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_044_00148.1 | 2e-77 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 6e-54 | lsd one like 1 |
Publications ? help Back to Top | |||
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