PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_33538

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 646aa MW: 73349 Da PI: 5.7283

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_33538	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	366.8	2.9e-112	272	642	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++ L++cA+ v++gd+++a++ L ++++++sp+gd+ qRla+yf+ +L+arla+++s +y+al +++++ s++l+a++++ +sP+ +s+ Nq PEQU_33538 272 QTILMQCAQTVATGDHQRAHESLRQIRQHSSPHGDAWQRLAHYFADGLEARLAGTGSVIYNALVAKRKT---ASDVLKAYQVYLAASPLKMVSYHFSNQ 367 678**********************************************************999998...99********************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +Il+ + +++rvHi+D++i G+QWp++l+ L++ p+gpp+lRiTg++ p++g +e++eetg+rL ++Ae++g+pfe++v va++l+++++e+L+++ PEQU_33538 368 TILNTIGNATRVHILDYGIYFGFQWPPFLKMLSALPGGPPKLRITGIDVPQPGfrPSERIEETGHRLYHYAERFGIPFEYQV-VASKLDEVNVEDLHLE 465 ************************************************9************************9.8*********** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 ++E+l+Vn+v+++ +l de+++++ +rd++L+ +++l+P ++v v ++ +++++ Fl+rf eal+++salfd+le+++pre+e+r+ vEr l g+ + n PEQU_33538 466 EEEVLIVNCVFRITSLGDETMDVDCPRDRFLNNIRKLNPALFVNVTSNGSYGAPFFLTRFREALYHFSALFDMLEMTVPREHEQRMLVERDLYGKCAIN 564 *********************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v++cegaer er et+++ + r +aGF+++p+s++++k +k+ ++ ++ + ++v+e+ +l+lgW++r + +SaW+ PEQU_33538 565 VISCEGAERLERPETYKQAQVRCLRAGFEQLPVSSEITKMVKCGVKVHYHKDFSVDEDGRWLLLGWRGRIFIGLSAWK 642 *********************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.865	245	622	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-109	272	642	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MLMEEDMEDK FDMLESNPAL EATEKPFYEI IGEKYPPSPD RPPLYSSPSS EGSENHRSHD 60 FHTGVDGFPD NNQDPAYPET TELFHSRIFS TQASISSEND VASVLEQFKG DPDDLSDLFF 120 KNLPASQFEK GVEEAMKFLP SEAKLIVDAG AIGYDSPHEL KDLASIESKV EDARGRRQKG 180 RHDINFDLEE QRSNKQSAIS YEEPTVSSEM FDMVLLCSDE KLPKVISTIR EAMQNEAASK 240 NSPAITELKE PGKGRKSRVK KKQPKKEVVD LQTILMQCAQ TVATGDHQRA HESLRQIRQH 300 SSPHGDAWQR LAHYFADGLE ARLAGTGSVI YNALVAKRKT ASDVLKAYQV YLAASPLKMV 360 SYHFSNQTIL NTIGNATRVH ILDYGIYFGF QWPPFLKMLS ALPGGPPKLR ITGIDVPQPG 420 FRPSERIEET GHRLYHYAER FGIPFEYQVV ASKLDEVNVE DLHLEEEEVL IVNCVFRITS 480 LGDETMDVDC PRDRFLNNIR KLNPALFVNV TSNGSYGAPF FLTRFREALY HFSALFDMLE 540 MTVPREHEQR MLVERDLYGK CAINVISCEG AERLERPETY KQAQVRCLRA GFEQLPVSSE 600 ITKMVKCGVK VHYHKDFSVD EDGRWLLLGW RGRIFIGLSA WKPRCY

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MLMEEDMEDK FDMLESNPAL EATEKPFYEI IGEKYPPSPD RPPLYSSPSS EGSENHRSHD  60
FHTGVDGFPD NNQDPAYPET TELFHSRIFS TQASISSEND VASVLEQFKG DPDDLSDLFF  120
KNLPASQFEK GVEEAMKFLP SEAKLIVDAG AIGYDSPHEL KDLASIESKV EDARGRRQKG  180
RHDINFDLEE QRSNKQSAIS YEEPTVSSEM FDMVLLCSDE KLPKVISTIR EAMQNEAASK  240
NSPAITELKE PGKGRKSRVK KKQPKKEVVD LQTILMQCAQ TVATGDHQRA HESLRQIRQH  300
SSPHGDAWQR LAHYFADGLE ARLAGTGSVI YNALVAKRKT ASDVLKAYQV YLAASPLKMV  360
SYHFSNQTIL NTIGNATRVH ILDYGIYFGF QWPPFLKMLS ALPGGPPKLR ITGIDVPQPG  420
FRPSERIEET GHRLYHYAER FGIPFEYQVV ASKLDEVNVE DLHLEEEEVL IVNCVFRITS  480
LGDETMDVDC PRDRFLNNIR KLNPALFVNV TSNGSYGAPF FLTRFREALY HFSALFDMLE  540
MTVPREHEQR MLVERDLYGK CAINVISCEG AERLERPETY KQAQVRCLRA GFEQLPVSSE  600
ITKMVKCGVK VHYHKDFSVD EDGRWLLLGW RGRIFIGLSA WKPRCY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-51	255	644	3	381	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020596441.1	0.0	scarecrow-like protein 14
Refseq	XP_020596442.1	0.0	scarecrow-like protein 14
TrEMBL	A0A3G2CI12	0.0	A0A3G2CI12_CYMEN; Scarecrow-like protein 9-like transcript variant X2
STRING	XP_008784606.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-160	SCARECROW-like 14