PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_32626
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family Trihelix
Protein Properties Length: 334aa    MW: 38067 Da    PI: 9.0597
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_32626genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.33.2e-26990286
    trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                W ++e++ Li +rrem++ ++++k++k+lWe++s+kmr++g+ rs+++C++kw+nl k++kk k++ +++    + + py+++l+
  PEQU_32626  9 WAQEETRGLISLRREMDRLFNTSKSNKHLWEQISAKMRHKGYDRSATMCTDKWRNLLKEFKKAKHQYRSG---GTVKLPYYKELD 90
                ********************************************************************97...34479*****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.699165IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.6E-5367IPR009057Homeodomain-like
SMARTSM007172.8E-4567IPR001005SANT/Myb domain
CDDcd122031.01E-27772No hitNo description
PfamPF138377.3E-21892No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
APKKRAETWA QEETRGLISL RREMDRLFNT SKSNKHLWEQ ISAKMRHKGY DRSATMCTDK  60
WRNLLKEFKK AKHQYRSGGT VKLPYYKELD ELLKDRSKNA ASKNPMPSKV DSCFRFSEKD  120
SSYRSGATEV EKPYGAITTS YRSALNLERR LDPDGLPLAI TSADAAAAGG VPPWNWRDTS  180
ANGCDNHSSY GGRVILVKCG VYTKKIGIDG SAEAIKEAIK SAFGLRTRRA FWLEDEDEVV  240
RSLDRDMPLG TYTLHLDEGI HIKICLYEDA DRMTVRTEDK TLYSKEDFRE FLLRHNWTCL  300
RELGGFHSVD THSLNTLDDL RPGAIYQGVR LLGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A8e-41388186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020593208.10.0trihelix transcription factor GT-1-like isoform X1
SwissprotQ9FX531e-139TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A2I0VDQ00.0A0A2I0VDQ0_9ASPA; Trihelix transcription factor GT-1
STRINGXP_010248872.11e-173(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-137Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]