PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_32043

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRF

Protein Properties

Length: 438aa MW: 47575.6 Da PI: 7.9615

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_32043	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.9	8.4e-24	81	124	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e PEQU_32043 81 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKRVE 124 79****************************************98 PP
2	QLQ	44.8	3.8e-16	10	46	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+ +L++Q l+yKy+ a++P+P++Ll+ i++ PEQU_32043 10 GPFTTSQWSELEQQTLIYKYIDAKVPLPSNLLLSIRR 46 59*******************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.4E-8	10	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.533	11	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.1E-11	11	45	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.709	81	125	IPR014977	WRC domain
Pfam	PF08879	3.6E-20	82	124	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
IQGAVSEISG PFTTSQWSEL EQQTLIYKYI DAKVPLPSNL LLSIRRSINP SGLSSFIAGT 60 YRPAGTLGWG NFHLGLAGSA DPEPGRCRRT DGKKWRCSRD AVVDQKYCER HMNRGRHRSR 120 KRVEGHNGHA AKAAVPAAIT SSQSASALSS GGSSNNLAVA QQQSKNIQPS FTEPSSLQLD 180 RLLMNRDNTN VQRQDAKGLS VLTDVNSKST GTLLPMSKQL NPFEETSTRV DLGLVSTDSV 240 LNNEGNCSSE NLSFVFYHSE MNDQHTRSHP FPFRHFIDDW SKTPSDGMEK KQSNRTELSI 300 SIPISSSANQ DKLSFSPLRL SCEFNPTNDG TQRGLSWIPI SWEPNIGGPL GEVLTNTSST 360 TPKDLSSNLS ASSLNLMTDG WNSKARFESS PTGVLQESGF GSLSSSAGSS PRAENHKAHE 420 SDDLLGSTFV NLSTNPSL

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

IQGAVSEISG PFTTSQWSEL EQQTLIYKYI DAKVPLPSNL LLSIRRSINP SGLSSFIAGT  60
YRPAGTLGWG NFHLGLAGSA DPEPGRCRRT DGKKWRCSRD AVVDQKYCER HMNRGRHRSR  120
KRVEGHNGHA AKAAVPAAIT SSQSASALSS GGSSNNLAVA QQQSKNIQPS FTEPSSLQLD  180
RLLMNRDNTN VQRQDAKGLS VLTDVNSKST GTLLPMSKQL NPFEETSTRV DLGLVSTDSV  240
LNNEGNCSSE NLSFVFYHSE MNDQHTRSHP FPFRHFIDDW SKTPSDGMEK KQSNRTELSI  300
SIPISSSANQ DKLSFSPLRL SCEFNPTNDG TQRGLSWIPI SWEPNIGGPL GEVLTNTSST  360
TPKDLSSNLS ASSLNLMTDG WNSKARFESS PTGVLQESGF GSLSSSAGSS PRAENHKAHE  420
SDDLLGSTFV NLSTNPSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020591549.1	0.0	growth-regulating factor 6-like isoform X2
Swissprot	Q6AWY3	1e-115	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2I0WNK8	0.0	A0A2I0WNK8_9ASPA; Growth-regulating factor 6
STRING	XP_008790288.1	1e-151	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	2e-68	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]