PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_32002
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NF-YA
Protein Properties Length: 236aa    MW: 26357.1 Da    PI: 10.2164
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_32002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.15.3e-3269124258
   CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  p+YVNaKQ+++I++RR++Rak+e ++kl  k rkpylheSRh hA+rRpRg+gGrF
  PEQU_32002  69 TPIYVNAKQFHGIIRRRKARAKAEMKNKL-VKIRKPYLHESRHLHAMRRPRGCGGRF 124
                 7****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.2E-3666127IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.63767127IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.1E-247092IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.9E-2870124IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607292IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.1E-24101124IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
KPQRTQQHST IISLQSPSDF HGRFELGLGQ SVACSNYPYM DQCYGLFTTH GAQAMHGRML  60
LPLNMTAETP IYVNAKQFHG IIRRRKARAK AEMKNKLVKI RKPYLHESRH LHAMRRPRGC  120
GGRFLNTKKD ADVQNVKSDN HNNGKHLTRP AITSPSSEIL QSDSGNLNSA SCGSCISRSE  180
VTSMYSQGKN DHFHVIEHLR PSLYLPLANM IVGDRSSVIL SKWGTSADGC CDLLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A3e-2068127262HAPB protein
4g92_A3e-2068127262HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575373.11e-178nuclear transcription factor Y subunit A-7-like isoform X2
TrEMBLA0A2I0WD141e-138A0A2I0WD14_9ASPA; Nuclear transcription factor Y subunit A-10
STRINGXP_008787766.13e-92(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-36nuclear factor Y, subunit A10