PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_31816 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 24084 Da PI: 6.0389 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.6e-10 | 3 | 34 | 12 | 45 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 l +a+k+lG+ W+ Ia++++ gR+++ +k++w+ PEQU_31816 3 LNEAHKELGNS-WAEIAKKIP-GRSENFIKNHWN 34 669******99.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.303 | 1 | 41 | IPR017930 | Myb domain |
CDD | cd00167 | 3.29E-6 | 1 | 37 | No hit | No description |
SuperFamily | SSF46689 | 3.18E-8 | 2 | 42 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-11 | 2 | 35 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.6E-9 | 2 | 34 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
NLLNEAHKEL GNSWAEIAKK IPGRSENFIK NHWNATKRKL SSKGKSRIRK TTKGKTFLLQ 60 EYIVKTTEFL NNSTTTKEQI LTTTKAETSD LNFINGGDYF NESLEETFDF MAASPPQFHE 120 IFGKEVNESS SNGGNQDFYS DLYLSYLMDG LLVTSEFVEF HGERLEDLIE HMVDLGCKKD 180 MDLIKMISLC SSQGCSSNYT RRRSYDYNFT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020588892.1 | 1e-153 | LOW QUALITY PROTEIN: myb protein-like | ||||
TrEMBL | A0A2I0W9L3 | 1e-71 | A0A2I0W9L3_9ASPA; Transcription factor MYB98 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25499 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 5e-18 | myb domain protein 119 |