PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_31719 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 21395.8 Da PI: 5.1107 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.4 | 8.6e-37 | 12 | 109 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrrkC +dC++apyf e+++ f vh++FGasn+ k+l +l++ +r+da+ slvyeA++ dP+yG+v+ i++lqq+l+q + el+++ PEQU_31719 12 PCAGCKFLRRKCRPDCIFAPYFLPEEQQMFVLVHRVFGASNLAKILIDLHPRQRQDAVISLVYEARMYFIDPIYGCVRKISALQQELKQIQCELSYAL 109 7*********************99999******************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.414 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-36 | 12 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MAAGWGSLHS NPCAGCKFLR RKCRPDCIFA PYFLPEEQQM FVLVHRVFGA SNLAKILIDL 60 HPRQRQDAVI SLVYEARMYF IDPIYGCVRK ISALQQELKQ IQCELSYALA ELSRWESAIA 120 VLMKMEQETV IMMNGCDVSA LDGGVKTEVY DFGIVASKKI SKGEKEMGAF EREIDFAEDD 180 ELRSLLEW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-39 | 12 | 115 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-39 | 12 | 115 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020703751.1 | 1e-100 | LOB domain-containing protein 12-like | ||||
Refseq | XP_020703752.1 | 1e-100 | LOB domain-containing protein 12-like | ||||
Swissprot | Q32SG3 | 2e-43 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | A0A2I0WXE1 | 2e-99 | A0A2I0WXE1_9ASPA; LOB domain-containing protein 6 | ||||
STRING | Si024114m | 2e-43 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 4e-41 | LBD family protein |