PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_31638

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

HB-other

Protein Properties

Length: 1746aa MW: 196517 Da PI: 5.602

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_31638	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.2	1.2e-17	28	83	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR +++qle+Le+ ++ + yps++ r+eL++k+gL++rq ++WF+ rR k++k PEQU_31638 28 SKRKMKSPYQLEILEKTYAVETYPSETLRAELSAKTGLSDRQLQMWFCHRRLKDRK 83 589999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-15	18	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-15	19	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.467	24	84	IPR001356	Homeobox domain
SMART	SM00389	1.8E-14	26	88	IPR001356	Homeobox domain
CDD	cd00086	3.56E-13	27	83	No hit	No description
Pfam	PF00046	2.3E-15	28	83	IPR001356	Homeobox domain
PROSITE profile	PS50827	16.873	519	578	IPR018501	DDT domain
SMART	SM00571	2.7E-20	519	578	IPR018501	DDT domain
Pfam	PF02791	5.4E-17	520	575	IPR018501	DDT domain
Pfam	PF05066	1.3E-15	701	768	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	9.9E-8	910	949	IPR028942	WHIM1 domain
Pfam	PF15613	7.0E-14	1090	1162	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1746 aa Download sequence Send to blast
MEIADGGDGN PPPEGWKKPP EGGEDKPSKR KMKSPYQLEI LEKTYAVETY PSETLRAELS 60 AKTGLSDRQL QMWFCHRRLK DRKFAPGKKA KKVEEPPSPP PPGEDLASVE AQLGEPLRDD 120 GPILGVEFDP LPPGAFGAPI GMSTQAKQLV RPYDGKSMKI QTSALLPSME HSFLSGSLTG 180 KRKAAASGAH SVHPQVPPRA LQEYQFLPEQ PSIRSESYER VPQSHFYDPP VSTPSTRIPS 240 LPAGNQYLHG NDQIAPTYTF QGHISSSGLL SQQAREQLYT NEYDGAPHGS PFRNSTADPQ 300 FSIHQTLGLE NPFSLSERRI VREEDSCRID RKRKSEEARI AKEVEAHEKR IRKELEKQDI 360 LRRKREEQMR REMERLDRDR RKEEERILRE KQREEERFLR EQRRENERRE KIMLKENRRA 420 EKLRRKEELR KQKEAARLKA ANERATARRI AKESMELIED ERLELMELAA SRKGLSSIIS 480 LDCDTLEQLD SFKVMLNAFP PKSVKLKKPF SVQPWIESEE NVGNFLMAWK FLITFADVLG 540 LWPFTLDEFL QSLHDYDSRL LGEIHVALLK SIIKDIEEFA RTPAVALGVN QNSVGNPGGG 600 HPHIVEGAYA WGFNICSWQQ HLNYFTWPEI LRQFALAAGF GPQLKKRNVE RTYFRDGHED 660 NDGEDIISTL RNGAAAENAV ALMQVRGYNH RRRPRHRLTP GTVKFAAFHV LSLEGSKGLT 720 ILDVAEKIQK SGLRDLTTSK TPEASIAAAL SRDTKLFERT APSTYCVRAP FRKNPVDADA 780 IFAAARERIQ AFQSGFSDSD EVEKDADDGD DGERDEDSEF ENADEPEVDD CSVEAKMNKD 840 LPYMTKLRGA LTSNSANNKK KEILCDGIVL TPPNSLRHSD KVFQDALPNS KQASTNLEGA 900 EIDESNLGDP WVQGLTEGDY ADLSVEERLN ALVALIGVAI EGNSIRLILE ERLEAATALK 960 KQMWAEAQLD KRRYKEEYLN KSQYSSFLIC KPESAQAITG TDGCQTPLQL PYTKENDGNL 1020 EFLGNDQFPD ASSLNNIHNL PVERNGLGQE FSANPESSFT LQHYGHAAEK PRFQLKSYIG 1080 HKAEQLYVYR SLPLGQDRRR NRYWLFSTSA SPNDPGSGRI FFESRDGLWR LIDSEETFDS 1140 LLDALDTRGI RESHLHSMLQ RIETTFKEAL ARHKKHAASA KTSGFHFKPG SNESIRSPDC 1200 YTEHDSPSST HSGVTSDSVE CSTSFRIQLG RSKMERMSAL KRYHGFLKWM WKECCNNPLL 1260 LCAVRYGKKR CSELLQTCQI CYQSYFAEER HCTSCHRMFK SIHKGDAMFA EHIANCIVKR 1320 KVDKDSESQM VDSSLPIGVH LLKTQLSLVE VSIPAEALQP FWTEGYRKSW GVKLNSASSA 1380 DDFLQLLTLL EGAIKREHLS SNFETTNELL SSAKVSSAAA NSTSISGSVP VLPWIPDTTS 1440 AVALRLLELD ASISYMPQQK SASLKGESRD FFKPSRFTVV KKLHEFEPAG TPERVDYQIE 1500 GRWLDSSSGR RGRGRGSRGG RVGRGRGRGG RGTRATSIVS TSDFNEENIS NLVKKRKLSG 1560 RGRTRGRGRR RGRRSVRPRQ RSESQVPSSR ATFFHSFGDV GACSKEESAE ESLRSSGGDE 1620 WGIEGQNYIK QDDNSAGSQS LDDNEQVSGD EYDEPVPKYG ARYNQSSSIG GMDDESEEEE 1680 MDEDAEEEED YGDQGALEDM EDEVDEDDEE MVEDDEMTDA DDANGDEDGD EDEEEGPSSF 1740 SSGYSD

Sequence ? help Back to Top

Protein Sequence Length: 1746 aa Download sequence Send to blast

MEIADGGDGN PPPEGWKKPP EGGEDKPSKR KMKSPYQLEI LEKTYAVETY PSETLRAELS  60
AKTGLSDRQL QMWFCHRRLK DRKFAPGKKA KKVEEPPSPP PPGEDLASVE AQLGEPLRDD  120
GPILGVEFDP LPPGAFGAPI GMSTQAKQLV RPYDGKSMKI QTSALLPSME HSFLSGSLTG  180
KRKAAASGAH SVHPQVPPRA LQEYQFLPEQ PSIRSESYER VPQSHFYDPP VSTPSTRIPS  240
LPAGNQYLHG NDQIAPTYTF QGHISSSGLL SQQAREQLYT NEYDGAPHGS PFRNSTADPQ  300
FSIHQTLGLE NPFSLSERRI VREEDSCRID RKRKSEEARI AKEVEAHEKR IRKELEKQDI  360
LRRKREEQMR REMERLDRDR RKEEERILRE KQREEERFLR EQRRENERRE KIMLKENRRA  420
EKLRRKEELR KQKEAARLKA ANERATARRI AKESMELIED ERLELMELAA SRKGLSSIIS  480
LDCDTLEQLD SFKVMLNAFP PKSVKLKKPF SVQPWIESEE NVGNFLMAWK FLITFADVLG  540
LWPFTLDEFL QSLHDYDSRL LGEIHVALLK SIIKDIEEFA RTPAVALGVN QNSVGNPGGG  600
HPHIVEGAYA WGFNICSWQQ HLNYFTWPEI LRQFALAAGF GPQLKKRNVE RTYFRDGHED  660
NDGEDIISTL RNGAAAENAV ALMQVRGYNH RRRPRHRLTP GTVKFAAFHV LSLEGSKGLT  720
ILDVAEKIQK SGLRDLTTSK TPEASIAAAL SRDTKLFERT APSTYCVRAP FRKNPVDADA  780
IFAAARERIQ AFQSGFSDSD EVEKDADDGD DGERDEDSEF ENADEPEVDD CSVEAKMNKD  840
LPYMTKLRGA LTSNSANNKK KEILCDGIVL TPPNSLRHSD KVFQDALPNS KQASTNLEGA  900
EIDESNLGDP WVQGLTEGDY ADLSVEERLN ALVALIGVAI EGNSIRLILE ERLEAATALK  960
KQMWAEAQLD KRRYKEEYLN KSQYSSFLIC KPESAQAITG TDGCQTPLQL PYTKENDGNL  1020
EFLGNDQFPD ASSLNNIHNL PVERNGLGQE FSANPESSFT LQHYGHAAEK PRFQLKSYIG  1080
HKAEQLYVYR SLPLGQDRRR NRYWLFSTSA SPNDPGSGRI FFESRDGLWR LIDSEETFDS  1140
LLDALDTRGI RESHLHSMLQ RIETTFKEAL ARHKKHAASA KTSGFHFKPG SNESIRSPDC  1200
YTEHDSPSST HSGVTSDSVE CSTSFRIQLG RSKMERMSAL KRYHGFLKWM WKECCNNPLL  1260
LCAVRYGKKR CSELLQTCQI CYQSYFAEER HCTSCHRMFK SIHKGDAMFA EHIANCIVKR  1320
KVDKDSESQM VDSSLPIGVH LLKTQLSLVE VSIPAEALQP FWTEGYRKSW GVKLNSASSA  1380
DDFLQLLTLL EGAIKREHLS SNFETTNELL SSAKVSSAAA NSTSISGSVP VLPWIPDTTS  1440
AVALRLLELD ASISYMPQQK SASLKGESRD FFKPSRFTVV KKLHEFEPAG TPERVDYQIE  1500
GRWLDSSSGR RGRGRGSRGG RVGRGRGRGG RGTRATSIVS TSDFNEENIS NLVKKRKLSG  1560
RGRTRGRGRR RGRRSVRPRQ RSESQVPSSR ATFFHSFGDV GACSKEESAE ESLRSSGGDE  1620
WGIEGQNYIK QDDNSAGSQS LDDNEQVSGD EYDEPVPKYG ARYNQSSSIG GMDDESEEEE  1680
MDEDAEEEED YGDQGALEDM EDEVDEDDEE MVEDDEMTDA DDANGDEDGD EDEEEGPSSF  1740
SSGYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	30	KKPPEGGEDKPSKRK
2	690	697	RRRPRHRL
3	1562	1572	RTRGRGRRRGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020591526.1	0.0	LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2-like
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2I0XGX4	0.0	A0A2I0XGX4_9ASPA; Uncharacterized protein
STRING	XP_008811887.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator