PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_31568 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 340aa MW: 38275.1 Da PI: 8.599 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G +W+++++ g+ R++k+c++rw +yl PEQU_31568 14 KGLWSPEEDEKLLKHITKYGHTSWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.2 | 5.2e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE++ +++ +++lG++ W+ Ia+ ++ gRt++++k+ w++ PEQU_31568 67 RGTFSQEEEDFIIEIHAMLGNR-WSQIAAQLP-GRTDNEIKNQWNS 110 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-25 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.794 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.09E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.364 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.59E-10 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MSKQSCFHNQ KQRKGLWSPE EDEKLLKHIT KYGHTSWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQEEEDFIIE IHAMLGNRWS QIAAQLPGRT DNEIKNQWNS CIKKKLRQIG 120 IDPNTHKALS EIEGTQDKIS SGTRINNQTV IKDLTTNSEG YCSSSKLSCS ISTTTLPVSS 180 NPFFWFSNSN IGFGMNPELS YSSITSAPLS TSSSNLYNYK ELKNLLDLPF RETGNTNSSS 240 CKYSSFLNGS LCSGPELTTD KGNKYHLPGE NSERKWSECL HGNLQVSSLP RCQIQPLQAG 300 EVKDESHFGM ESLNLCFQNQ QPGLLQLQSS DLYGKILQKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-30 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020582552.1 | 0.0 | transcription repressor MYB6-like isoform X1 | ||||
TrEMBL | A0A2I0V9R4 | 1e-100 | A0A2I0V9R4_9ASPA; Transcription factor MYB86 | ||||
STRING | GSMUA_Achr2P18440_001 | 6e-92 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3092 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 2e-77 | myb domain protein 55 |