PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_31459 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 26189.6 Da PI: 8.8704 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.6 | 1.4e-13 | 2 | 43 | 7 | 48 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 eEd++l+++++ +G g W+ ar g++Rt+k+c++rw++yl PEQU_31459 2 EEDLILINYIAIHGEGVWNNLARSAGLKRTGKSCRLRWLNYL 43 9***************************************97 PP | |||||||
2 | Myb_DNA-binding | 46 | 1.2e-14 | 49 | 128 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT...................................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...................................tWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ d++ ++G++ +W++Iar ++ gRt++++k++w++ PEQU_31459 49 RGNITPEEQLLIMDLHSRWGNRvhpsrdsickmfflkvrrktisdifmaiallqiavRWSKIARQLP-GRTDNEIKNYWRT 128 7999***************************************************************.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.952 | 1 | 47 | IPR017930 | Myb domain |
CDD | cd00167 | 2.19E-9 | 2 | 43 | No hit | No description |
SuperFamily | SSF46689 | 2.9E-18 | 2 | 47 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-5 | 2 | 45 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-11 | 2 | 43 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 2 | 50 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.455 | 44 | 130 | IPR017877 | Myb-like domain |
SMART | SM00717 | 9.4E-8 | 48 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-11 | 49 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 51 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.9E-18 | 102 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.32E-6 | 106 | 128 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 106 | 134 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEEDLILINY IAIHGEGVWN NLARSAGLKR TGKSCRLRWL NYLRPDVRRG NITPEEQLLI 60 MDLHSRWGNR VHPSRDSICK MFFLKVRRKT ISDIFMAIAL LQIAVRWSKI ARQLPGRTDN 120 EIKNYWRTRI QKKVKDGESV GCSSSPITND EGSSYNNTGL RVGLEEAMGA QPSHPIYPNA 180 NPQEPFFPAY SESNLGGTYL SVEDFWSTQS FNGVHRDSSM NYDACGFDW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF769480 | 0.0 | KF769480.1 Phalaenopsis equestris MYB transcription factor 15 (MYB15) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020585163.1 | 1e-137 | myb-related protein 305-like | ||||
Swissprot | P81391 | 9e-60 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A2I0VIW3 | 3e-88 | A0A2I0VIW3_9ASPA; Myb-related protein 305 | ||||
STRING | XP_008812482.1 | 9e-70 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 1e-59 | myb domain protein 21 |
Publications ? help Back to Top | |||
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