PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_30415
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family AP2
Protein Properties Length: 382aa    MW: 42858.4 Da    PI: 9.7303
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_30415genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.3e-173897155
         AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  PEQU_30415 38 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 97
                57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.05E-1738107IPR016177DNA-binding domain
PfamPF008471.2E-123897IPR001471AP2/ERF domain
SMARTSM003808.0E-2539111IPR001471AP2/ERF domain
PROSITE profilePS5103220.0239105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1539106IPR001471AP2/ERF domain
PRINTSPR003673.0E-54051IPR001471AP2/ERF domain
PRINTSPR003673.0E-587107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDEQQHGVVL KKARKERVCT AKERISKMPP CAAGKRSSIY RGVTRHRWTG RYEAHLWDKS  60
TWNQNQNKKG KQVYLGAYDD EEAAARAYDL AALKYWGAGT LINFPVSDYA RDLEEMQMVS  120
KEDYLVSLRR QAFPFCSLRY DKKKSSAFSR GFTKYRGIPR QPQSTRWEAP PPFGQMLGSE  180
FYSCSTSRDP TTEGKYAGGF SMERKIDLTT HIRWWTPKKS RQPESASTHE DVSRELQAVE  240
SSIQATEPYK LPLLGLPQKE KSQVQGTSAC SILSRSAAFK NFMEKASQIQ DGSSSKDPDQ  300
GKSVPHFFGS SELDSSGLTM GFGELPIQRS QYSLSPLLAA PIRTTWNAVE PIPDPVFWTS  360
LVPPTGQSLT TAVSSLPTNP VL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591665.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-116AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2H3YR901e-179A0A2H3YR90_PHODC; AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
STRINGXP_008802631.11e-180(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.21e-111AP2 family protein