PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_29621

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

HSF

Protein Properties

Length: 485aa MW: 53689.6 Da PI: 4.9431

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_29621	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.2	1.8e-35	18	110	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ ++sw +nsfvv++ ef++++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F kg+k+ll++i+ PEQU_29621 18 FLSKTYDMVDDPATDAIVSWGPGNNSFVVWNVPEFSRDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLKGQKHLLKSIN 105 9*******************99*************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + PEQU_29621 106 RRKPS 110 976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.6E-38	10	102	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.5E-34	13	107	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.3E-60	14	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-19	18	41	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.1E-30	18	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-19	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	57	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-19	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MTSPAVSATL TASAPPPFLS KTYDMVDDPA TDAIVSWGPG NNSFVVWNVP EFSRDLLPKH 60 FKHNNFSSFV RQLNTYGFRK VDPDKWEFAN EGFLKGQKHL LKSINRRKPS NAHTQQQQQP 120 NAPSGAVGAC VEVGKFGLEE EIERLKRDKN VLMQELVRLR QQQQGTDLQL QTLTQRLQGM 180 EQRQQQMMSF LAKAMQSPGF LAQLVQQHDS SRRVVGVVGK KRRLPKQENN LDGEISASQD 240 GQIIKYQPLM TEAVKSLLMQ ILKCESSSML ETRANSDGFL IENFSSHDGL RASENRNSCF 300 TLKEFPAPCL PSSSCFPAIH PSSAGISDMP APSKFPGIDL LSVVPETMSS SSTSMSAHES 360 TKIPGIMPND GSLDIAVDSL VPLVPDMFLG QLVDDSIPIE TENFSINSGI GIPTEDDSKL 420 PCINDSFWEQ FLVDSSLSSD VAQEVDSSIQ ETSDMHPEME TVWDSTQHMQ HLTERMGLLS 480 PEAKT

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MTSPAVSATL TASAPPPFLS KTYDMVDDPA TDAIVSWGPG NNSFVVWNVP EFSRDLLPKH  60
FKHNNFSSFV RQLNTYGFRK VDPDKWEFAN EGFLKGQKHL LKSINRRKPS NAHTQQQQQP  120
NAPSGAVGAC VEVGKFGLEE EIERLKRDKN VLMQELVRLR QQQQGTDLQL QTLTQRLQGM  180
EQRQQQMMSF LAKAMQSPGF LAQLVQQHDS SRRVVGVVGK KRRLPKQENN LDGEISASQD  240
GQIIKYQPLM TEAVKSLLMQ ILKCESSSML ETRANSDGFL IENFSSHDGL RASENRNSCF  300
TLKEFPAPCL PSSSCFPAIH PSSAGISDMP APSKFPGIDL LSVVPETMSS SSTSMSAHES  360
TKIPGIMPND GSLDIAVDSL VPLVPDMFLG QLVDDSIPIE TENFSINSGI GIPTEDDSKL  420
PCINDSFWEQ FLVDSSLSSD VAQEVDSSIQ ETSDMHPEME TVWDSTQHMQ HLTERMGLLS  480
PEAKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-25	16	110	18	123	Heat shock factor protein 1
5d5u_B	2e-25	1	107	12	129	Heat shock factor protein 1
5d5v_B	2e-25	1	107	12	129	Heat shock factor protein 1
5d5v_D	2e-25	1	107	12	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020599169.1	0.0	heat stress transcription factor A-1-like
Swissprot	Q84T61	1e-173	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2I0W8J2	0.0	A0A2I0W8J2_9ASPA; Heat stress transcription factor A-1
STRING	XP_008777830.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-102	heat shock transcription factor A1D

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]