PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_29143
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 310aa    MW: 35590.2 Da    PI: 8.7312
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_29143genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-16111156147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+q+G+ +W++Ia+ +  gR++k+c++rw++ 
       PEQU_29143 111 RGHWRPAEDAKLRELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 156
                      899*****************************.***********996 PP
2Myb_DNA-binding57.23.9e-18163206146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++T+eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ 
       PEQU_29143 163 KKAFTEEEEEKLLSAHRLYGNK-WALIARFFP-GRTDNAVKNHWHV 206
                      679*******************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.226106157IPR017930Myb domain
SMARTSM007174.7E-14110159IPR001005SANT/Myb domain
SuperFamilySSF466893.18E-29110204IPR009057Homeodomain-like
PfamPF002494.0E-16111156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-27112164IPR009057Homeodomain-like
CDDcd001674.16E-12114155No hitNo description
PROSITE profilePS5129425.811158212IPR017930Myb domain
SMARTSM007171.7E-16162210IPR001005SANT/Myb domain
PfamPF002496.1E-16163205IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-21165210IPR009057Homeodomain-like
CDDcd001678.73E-12165205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MELSPPSPPN LFPSESDRKT NERDRKTNER DRKTNERDRK TNERDRKTNE RDRKTNETGF  60
PLEQQQQQPF LPGLGLEGLS GGSGSNGSEK NGHSEEHEGE HESGQSKLCV RGHWRPAEDA  120
KLRELVAQYG PQNWNLIAEN LEGRSGKSCR LRWFNQLDPR INKKAFTEEE EEKLLSAHRL  180
YGNKWALIAR FFPGRTDNAV KNHWHVIVAR RHREQTNAHR RRKSSNTISS SSVQEFSNNL  240
QVNCYNNACI VESSISGNID ESLPTCTELS LNSSAYGSFR GHAFFPTHTH QTQPQQFQYF  300
TGMILPLFQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-331092115107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020576383.10.0myb-related protein 306-like
TrEMBLA0A455LA791e-135A0A455LA79_9ASPA; Transcription factor MYB35-like protein
STRINGcassava4.1_024606m4e-86(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-68myb domain protein 105