PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_28733

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

HSF

Protein Properties

Length: 413aa MW: 46946.4 Da PI: 4.757

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_28733	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	102.3	4.3e-32	1	84	9	101
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 +++d++++e++sws++++sf+v+++ ef++++Lp+yFkh+n++SF+RQLn+YgF+k++ e+ weF+++ F kg+k+ll++i+r+k PEQU_28733 1 MIDDSSTDEIVSWSSTNSSFIVWNPPEFSSRLLPTYFKHNNYSSFIRQLNTYGFHKIDPER---------WEFANEDFIKGQKHLLKNIHRRK 84 899*****************************************************999.........*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.7E-32	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.4E-45	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.5E-27	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.28E-29	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.7E-9	32	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	33	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.7E-9	45	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MIDDSSTDEI VSWSSTNSSF IVWNPPEFSS RLLPTYFKHN NYSSFIRQLN TYGFHKIDPE 60 RWEFANEDFI KGQKHLLKNI HRRKPIHSHS QPPADAERAA LVEEIENLQK EKARLQADSW 120 RFKQQHSIAR IQLEHVELRM QDMEQRQEKM VAFLQKAARN PKFVENIVKM AGAQDFSTLH 180 RKRRLPEADC CPEISENSFC ENSVNSTRNL KVGEVGDLLN QELCDRLKLG LCPSLSGNDW 240 NEDNGGNLLR MDCLPLGTGT PELSDSGASF CPRKNSLLMT ELDEGNDGLL SCHLDLTLAS 300 SSMQTDRIDQ LNRIPSTIDL AVAVVVDQST TNSSKEVGVD KMVAVNKREA GPATGRANDK 360 FWEQFLTERP GSSETEEASS SLKEDEEEEE EEEMALEQEN KWRNVKGMEQ LTL

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MIDDSSTDEI VSWSSTNSSF IVWNPPEFSS RLLPTYFKHN NYSSFIRQLN TYGFHKIDPE  60
RWEFANEDFI KGQKHLLKNI HRRKPIHSHS QPPADAERAA LVEEIENLQK EKARLQADSW  120
RFKQQHSIAR IQLEHVELRM QDMEQRQEKM VAFLQKAARN PKFVENIVKM AGAQDFSTLH  180
RKRRLPEADC CPEISENSFC ENSVNSTRNL KVGEVGDLLN QELCDRLKLG LCPSLSGNDW  240
NEDNGGNLLR MDCLPLGTGT PELSDSGASF CPRKNSLLMT ELDEGNDGLL SCHLDLTLAS  300
SSMQTDRIDQ LNRIPSTIDL AVAVVVDQST TNSSKEVGVD KMVAVNKREA GPATGRANDK  360
FWEQFLTERP GSSETEEASS SLKEDEEEEE EEEMALEQEN KWRNVKGMEQ LTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-18	1	83	36	129	Heat shock factor protein 1
5d5v_B	2e-18	1	83	36	129	Heat shock factor protein 1
5d5v_D	2e-18	1	83	36	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020573113.1	0.0	heat stress transcription factor A-5-like
Swissprot	Q6K6S5	1e-128	HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBL	A0A2I0X4C1	0.0	A0A2I0X4C1_9ASPA; Heat stress transcription factor A-5
STRING	XP_008803687.1	1e-150	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9000	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-105	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]