PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_27835 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 230aa MW: 25333.3 Da PI: 4.5126 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45 | 2.3e-14 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++ad+dv +i+ +P+l+ska elf+ +l r++ + ++ +tl+ s ++++v+ fdfl+d+v + PEQU_27835 1 MQADDDVGKIALPVPILVSKALELFLQDLCDRAYEVTTQKGAKTLNSSHLKQCVKMYSAFDFLTDVVNK 69 899***************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.59E-20 | 1 | 71 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.5E-19 | 1 | 68 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-13 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MQADDDVGKI ALPVPILVSK ALELFLQDLC DRAYEVTTQK GAKTLNSSHL KQCVKMYSAF 60 DFLTDVVNKV PNLGGIESVG DEKGITRRRK VVHDGDVLTE DLRSAKMAMR SANVSPRGRA 120 RGRGRGRGRP PLNRTIEKGS SYMKFEDEIE LSPEHDDPEG VNADTEVTER AKESKDPTDT 180 TITNTADLCP TKDCSAWPLS DGVGSLGIEP ANMVNLNMQM DEDEDYDNED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 2e-15 | 1 | 56 | 21 | 76 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 127 | RARGRGRGRG |
2 | 118 | 128 | RARGRGRGRGR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020580310.1 | 1e-170 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020580311.1 | 1e-170 | dr1-associated corepressor-like isoform X2 | ||||
TrEMBL | A0A2I0W1E1 | 9e-83 | A0A2I0W1E1_9ASPA; Nuclear transcription factor Y subunit C-3 | ||||
STRING | GSMUA_Achr10P07370_001 | 1e-71 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 7e-37 | nuclear factor Y, subunit C11 |