PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_27775 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GRAS | ||||||||
Protein Properties | Length: 149aa MW: 16975 Da PI: 5.298 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 131.9 | 7.3e-41 | 3 | 134 | 241 | 373 |
GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 v+ +eadhn++++ rf+++l+yy+a+fd+l+++lp++s+er k+E++ ++r+i++++a eg+e rhe+++kW+++++++GF +v +++++ q + PEQU_27775 3 VCAEEADHNHHQLEVRFANSLNYYAAVFDALNVSLPEDSSERLKIEKM-FARKIRSIIAREGTE---RHESFSKWSRKMKDCGFDNVGIGDREKIQSQV 97 6789********************************************.**************9...******************************** PP GRAS 340 llrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373 +lr++++ ++ve + ++l+l W++++L++vSaW PEQU_27775 98 ILRMYSDSNFSVErkeADGEALCLKWQEQQLYTVSAW 134 ******888***96533366777************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 15.574 | 1 | 112 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-38 | 3 | 134 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MGVCAEEADH NHHQLEVRFA NSLNYYAAVF DALNVSLPED SSERLKIEKM FARKIRSIIA 60 REGTERHESF SKWSRKMKDC GFDNVGIGDR EKIQSQVILR MYSDSNFSVE RKEADGEALC 120 LKWQEQQLYT VSAWAPMDVA GSSAVPQPD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-18 | 7 | 134 | 243 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020571989.1 | 1e-101 | scarecrow-like protein 28 | ||||
Swissprot | Q9CAN3 | 2e-33 | SCL28_ARATH; Scarecrow-like protein 28 | ||||
TrEMBL | A0A3G2CI56 | 2e-90 | A0A3G2CI56_CYMEN; Scarecrow-like protein 28-like | ||||
STRING | XP_008779212.1 | 4e-48 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 7e-36 | GRAS family protein |