PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_27747
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family RAV
Protein Properties Length: 322aa    MW: 35709.6 Da    PI: 9.9231
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_27747genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-1255103155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGV   + +grW A+I++      ++r++lg+f  + +Aa+a++ a+++++g
  PEQU_27747  55 SQYKGVVPQP-NGRWGAQIYEK-----HRRVWLGTFNLEHDAARAYDLAAQRFRG 103
                 78****9888.8*********3.....5**********99*************98 PP
2B390.31.5e-28171271197
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+ tpsdv+k++rlv+pk++ae+h    +g   +++ l +e     g++W+++++y+++s++yvltkGW++Fvk++gL +gD v F++++ +e++++
  PEQU_27747 171 FDKAVTPSDVGKLNRLVIPKQHAEKHfplaDGA--KGVLLNFEEgcAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLVAGDLVGFYRSKGEERQFY 267
                 89************************9975333..66677777766666****************************************8877777677 PP

                 EEEE CS
          B3  94 vkvf 97 
                 +  +
  PEQU_27747 268 IDCR 271
                 7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.69E-1755111IPR016177DNA-binding domain
CDDcd000187.90E-2655111No hitNo description
Gene3DG3DSA:3.30.730.101.7E-2056111IPR001471AP2/ERF domain
PfamPF008471.4E-856103IPR001471AP2/ERF domain
SMARTSM003802.6E-2856117IPR001471AP2/ERF domain
PROSITE profilePS5103220.3556111IPR001471AP2/ERF domain
PRINTSPR003679.1E-75768IPR001471AP2/ERF domain
PRINTSPR003679.1E-793113IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.3E-38162276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-28168273IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-27169264No hitNo description
SMARTSM010199.1E-20171273IPR003340B3 DNA binding domain
PROSITE profilePS5086313.719171272IPR003340B3 DNA binding domain
PfamPF023622.1E-25171271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MQSNSCNSSS SSTLDLPSPT LHPIHSNHSA ITSPAPTTPS SEPSTEAESK KLPSSQYKGV  60
VPQPNGRWGA QIYEKHRRVW LGTFNLEHDA ARAYDLAAQR FRGRDAITNF PPLSLSADPH  120
ELSFLLSRSK AEIVDMLRKH TYLDELRLCP PLFSPKNASV VSSKPAREHL FDKAVTPSDV  180
GKLNRLVIPK QHAEKHFPLA DGAKGVLLNF EEGCAGGKVW RFRYSYWNSS QSYVLTKGWS  240
RFVKEKGLVA GDLVGFYRSK GEERQFYIDC RPRGEEGGGV QTFRLFGVNI GILGSLNMNK  300
KRSFEGMEVG LLMKKQCVGG LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-4816827311117DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020579562.10.0AP2/ERF and B3 domain-containing protein Os05g0549800-like
SwissprotQ6L4H41e-109Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A2I0W0760.0A0A2I0W076_9ASPA; AP2/ERF and B3 domain-containing protein
STRINGXP_008799316.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-104related to ABI3/VP1 1
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]