PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_27701
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 403aa    MW: 44832.3 Da    PI: 5.996
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_27701genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.4e-07167188223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C++Cgk F+r  nL+ H+r H
  PEQU_27701 167 FCTICGKGFKRDANLRMHMRGH 188
                 6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-5164191No hitNo description
PROSITE profilePS5015711.946166193IPR007087Zinc finger, C2H2
SMARTSM003550.0026166188IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-6167215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128747.7E-4167188No hitNo description
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
SMARTSM0035549213246IPR015880Zinc finger, C2H2-like
SMARTSM0035521251273IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MLNNLSFLEQ KIHNIQGVVH SIVNQKSQIS SLPNEFAVQQ QVLTTDLTSI IVDLISTAGN  60
LLPSIKNNLF SSNSPPAQSC NSFDPSTQLE ADAPFPNHDP PTLEIEKCAG EYNELKKSED  120
DGREANHIED HDTKESEDGA ETDNLLLGSY EVLQLAKEEI LAPHTHFCTI CGKGFKRDAN  180
LRMHMRGHGE EYKTPAALSK PSKNSEPTLI KRYSCPFVGC KRNKDHKGFQ PLKTLLCVKN  240
HYKRTHCDKS YICSKCHSKK FSVLADLKTH EKHCGCDKWL CSCGTTFSRK DKLFGHVALF  300
QGHSPALPSE EGCGLGSSEH VGLEGNGYGF STNYLNDDVD IKLFDDDRGY LSTLSFEPYE  360
YGVSDDFMKV AFSFMENSPI ICPSELSDFG EKKGDSSDSH CML
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020588326.10.0zinc finger protein STOP1 homolog isoform X1
RefseqXP_020588328.10.0zinc finger protein STOP1 homolog isoform X2
SwissprotQ943I61e-145STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2I0VUD90.0A0A2I0VUD9_9ASPA; Zinc finger protein STOP1 like
STRINGOB01G47470.11e-150(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-140C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]