PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_27700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 389aa    MW: 44008.7 Da    PI: 6.7181
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_27700genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2991.2e-9193861374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv+lLl cA+av+ +d + a  lL +l  ++s +g+p+qR++ayft +L a  +++ s+ y+++ + +++    +ee++a++ f  +sP+++f+h+taN
  PEQU_27700   9 LVRLLLLCATAVDRNDRSSAADLLRQLYRNVSLSGSPIQRVTAYFTDGLMASFMSKNSSFYSSIMADPSP----AEEFSAFTSFCLASPYYQFAHFTAN 103
                 6899***************************************************9******99999997....8999********************* PP

        GRAS 100 qaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledle 190
                 qaI ea+e++      ++H+iDfd+s+GlQWp+L+q+L++++  e+p +l iTg+g+    s eel+ t++rL++fA+ + ++ f+f+    +   +  
  PEQU_27700 104 QAIFEAFEEDekwnsGCLHVIDFDVSYGLQWPSLIQSLSDKAtnEKPINLLITGFGK----SMEELKDTEKRLSSFASGFrNLFFKFEG-RLR-GGK-G 195
                 ********9966666778*********************999845566*********....****************9874799****9.333.333.3 PP

        GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvEre 288
                   e++v+++ ++aVnlv+ lh+l     s ++ + ++L ++++l+P vv++ve+e ++ n +sFl rf+e+l+y++a+fdsl+  lp+ ++er  +E+ 
  PEQU_27700 196 QGEIQVQKNSTVAVNLVFYLHSLK----SYSD-ICTTLTQINELNPSVVTLVEKEGSRgNPNSFLSRFMESLQYFAAMFDSLDDCLPARNKERLRIEKN 289
                 579********************8....3333.5689*******************99999************************************** PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr.........kvk.sdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                  lg ei+ +v  e+++   r e+le+W++ +e+  F+ v++s++ ++qaklll+          ++ + g+r+ e+   ++l lgW+d  L++++aWr
  PEQU_27700 290 HLGTEIRHAVKDEEEK-GCRYERLETWKAVMERYRFEGVRMSSRSVSQAKLLLKitshssamdDHGtGTGFRIFERdeGNALSLGWQDTHLITATAWR 386
                 ***********99987.99**********************************822222221123333468886553255666**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.6081354IPR005202Transcription factor GRAS
PfamPF035144.2E-899386IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MADEKGLQLV RLLLLCATAV DRNDRSSAAD LLRQLYRNVS LSGSPIQRVT AYFTDGLMAS  60
FMSKNSSFYS SIMADPSPAE EFSAFTSFCL ASPYYQFAHF TANQAIFEAF EEDEKWNSGC  120
LHVIDFDVSY GLQWPSLIQS LSDKATNEKP INLLITGFGK SMEELKDTEK RLSSFASGFR  180
NLFFKFEGRL RGGKGQGEIQ VQKNSTVAVN LVFYLHSLKS YSDICTTLTQ INELNPSVVT  240
LVEKEGSRGN PNSFLSRFME SLQYFAAMFD SLDDCLPARN KERLRIEKNH LGTEIRHAVK  300
DEEEKGCRYE RLETWKAVME RYRFEGVRMS SRSVSQAKLL LKITSHSSAM DDHGTGTGFR  360
IFERDEGNAL SLGWQDTHLI TATAWRRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-54338513378Protein SCARECROW
5b3h_A3e-54338512377Protein SCARECROW
5b3h_D3e-54338512377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020588323.10.0scarecrow-like protein 23
TrEMBLA0A3G2CI360.0A0A3G2CI36_CYMEN; Scarecrow-like protein 23-like transcript variant X1
STRINGXP_008784262.11e-162(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.17e-55GRAS family protein