PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_27252
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 262aa    MW: 30123.5 Da    PI: 7.0627
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_27252genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.3e-081745230
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIart 30
                     g WT+eEd +lv +++++G  +W+t +++
       PEQU_27252 17 GWWTAEEDSKLVSYIQKYGHQNWRTLPKR 45
                     55***********************9987 PP
2Myb_DNA-binding582.1e-1894138248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g++T++E+e +++++k+lG++ W++Ia+ m+ gRt++++k+ w++yl
       PEQU_27252  94 GNFTQQEEETIIQLHKMLGNR-WSKIASFMP-GRTDNHIKNVWNTYL 138
                      89*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.9531187IPR017877Myb-like domain
SuperFamilySSF466891.94E-2514134IPR009057Homeodomain-like
SMARTSM007170.00131589IPR001005SANT/Myb domain
PfamPF002495.1E-61745IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-211994IPR009057Homeodomain-like
CDDcd001676.92E-61987No hitNo description
PROSITE profilePS5129423.93488142IPR017930Myb domain
SMARTSM007171.0E-1392140IPR001005SANT/Myb domain
PfamPF002491.8E-1694138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2495141IPR009057Homeodomain-like
CDDcd001677.68E-1095138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRGRAPCCD RTEVKKGWWT AEEDSKLVSY IQKYGHQNWR TLPKRADVYM LIKLLLDILI  60
HNYLIEPKKN CLLRCGKSCR LRWVNYLCPG IKHGNFTQQE EETIIQLHKM LGNRWSKIAS  120
FMPGRTDNHI KNVWNTYLRK RVLPQNNNLM LNSGANTSNL IQTQTHCDIW SYALPAGPGE  180
LASAKDNNDL VLPFESEAYS CLATVDEIEQ ISTLEFGRDE RSLMELAEEL GLFDDGDVEE  240
NWKKMVTKGG EDPVAAFIRN LM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-261314224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020599295.11e-174transcription factor MYB58-like
SwissprotQ6R0A67e-55MYB63_ARATH; Transcription factor MYB63
TrEMBLA0A2I0XFH24e-66A0A2I0XFH2_9ASPA; Myb-related protein Myb4
STRINGGLYMA15G41255.17e-57(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.13e-57myb domain protein 63
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]