PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_27189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GATA | ||||||||
Protein Properties | Length: 182aa MW: 20324.3 Da PI: 9.3758 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 44.2 | 2.6e-14 | 143 | 177 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C+nCg + Tp +Rrgp g+++LCnaCGl+++ k PEQU_27189 143 CQNCGISAklTPAMRRGPGGPRSLCNACGLMWANK 177 *****9999***********************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 7.5E-10 | 4 | 39 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.809 | 4 | 39 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.6E-13 | 7 | 38 | IPR010399 | Tify domain |
Pfam | PF06203 | 8.2E-16 | 73 | 114 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.076 | 73 | 115 | IPR010402 | CCT domain |
SuperFamily | SSF57716 | 8.08E-9 | 136 | 178 | No hit | No description |
SMART | SM00401 | 6.3E-4 | 137 | 181 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.6E-12 | 141 | 177 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 143 | 170 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.63E-9 | 143 | 177 | No hit | No description |
Pfam | PF00320 | 6.5E-12 | 143 | 177 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MQLVGSNPNQ LTLLFQGEVY VFDSVTPEKV QAVLLLLGGC EVPTSISSSA FACNQDDRGM 60 DDILRRTNIP AKRLASLIRF REKRKERCFD KKIRYDVRKE VALRMKRRKG QFAGKANPED 120 ESSPSLSCDP PSSQDDTPRE TNCQNCGISA KLTPAMRRGP GGPRSLCNAC GLMWANKVMT 180 YY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020577334.1 | 1e-129 | GATA transcription factor 18-like isoform X2 | ||||
Swissprot | A2XKR7 | 1e-82 | GAT18_ORYSI; GATA transcription factor 18 | ||||
TrEMBL | A0A2I0WF45 | 1e-118 | A0A2I0WF45_9ASPA; GATA transcription factor 24 | ||||
STRING | XP_008794051.1 | 1e-100 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-60 | ZIM-like 1 |