PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_27014
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TALE
Protein Properties Length: 301aa    MW: 33608.2 Da    PI: 6.5144
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_27014genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-092282622155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yps++++  LA+++gL+++q+ +WF N+R ++
  PEQU_27014 228 KWPYPSESQKVALAESTGLDQKQINNWFINQRKRH 262
                 569*****************************885 PP
2ELK39.71e-13182203122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK qLlrKYsgyLgsLkqEF+
  PEQU_27014 182 ELKGQLLRKYSGYLGSLKQEFL 203
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-174690IPR005540KNOX1
PfamPF037904.7E-214887IPR005540KNOX1
SMARTSM012563.9E-2393144IPR005541KNOX2
PfamPF037911.1E-1998142IPR005541KNOX2
PfamPF037891.8E-10182203IPR005539ELK domain
SMARTSM011881.2E-7182203IPR005539ELK domain
PROSITE profilePS5121311.174182202IPR005539ELK domain
PROSITE profilePS5007112.843202265IPR001356Homeobox domain
SuperFamilySSF466899.41E-20204279IPR009057Homeodomain-like
SMARTSM003899.4E-14204269IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-28207267IPR009057Homeodomain-like
CDDcd000865.42E-13214266No hitNo description
PfamPF059202.8E-17222261IPR008422Homeobox KN domain
PROSITE patternPS000270240263IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MENWSGGNNP LMIMPLLSST AAGSTNPLIL HHQPPPPPPS DGYDSTLIKA KIISHPQYPR  60
LLSAYVNLHK VGAPPEVVAR LEEACASSYI SSSGGGGGED PALDQFMEAY CEMLTKYEQE  120
LSKPFKEALL FLSRIDSQFK SLSLSLPPAP SQVGGELEKN GSSEDDIELC DNFVNPEAGD  180
RELKGQLLRK YSGYLGSLKQ EFLKKRKKGK LPKEARQQLL DWWARHYKWP YPSESQKVAL  240
AESTGLDQKQ INNWFINQRK RHWKPSEEMQ FVVMDASHPH YFMDGGFAGG NPFAIDCTPL  300
L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197206LKQEFLKKRK
2203207KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020592706.10.0homeobox protein knotted-1-like LET6
SwissprotP466081e-123HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A2I0WGJ80.0A0A2I0WGJ8_9ASPA; Homeobox protein SBH1
STRINGXP_008795979.11e-144(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2107357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-108KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]