PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_26907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LSD | ||||||||
Protein Properties | Length: 254aa MW: 27070.5 Da PI: 6.4892 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 36 | 1.1e-11 | 170 | 193 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C lLsYPrG+++++Ca+C+t PEQU_26907 170 CGSCSELLSYPRGSKYIQCACCQT 193 ***********************9 PP | |||||||
2 | zf-LSD1 | 32.4 | 1.6e-10 | 208 | 232 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+ ++s RC++C++V PEQU_26907 208 CGKCSVLLMYPYTSSSLRCSSCHHV 232 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.7E-14 | 167 | 197 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.0E-9 | 170 | 193 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.2E-7 | 206 | 234 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.0E-8 | 208 | 232 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MSSSPDSIPP GWEEAIASSP ETLPPGFENH SSLSSPTSPP QENPPSSLSS PASPQPQENQ 60 VNCTDTSLSP SPTLPKESRS KHPPSSLNPP QENRIPLSHS PRPPPQEAPV SLSISFPPPL 120 LEKRDAMPRP SLQSQDGQGP VPSSQFPRGN LGSLNPPLQQ SLPEMGQMVC GSCSELLSYP 180 RGSKYIQCAC CQTTNFVLEA HQVGIVKCGK CSVLLMYPYT SSSLRCSSCH HVTEIGPQNV 240 RPPVSVLQGF PAPP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020587264.1 | 1e-177 | pectinesterase inhibitor 10-like isoform X1 | ||||
TrEMBL | A0A2I0XAE5 | 2e-60 | A0A2I0XAE5_9ASPA; Protein LOL5 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 1e-33 | lsd one like 2 |