PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_26150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GRAS | ||||||||
Protein Properties | Length: 184aa MW: 20416.8 Da PI: 6.8945 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 136.4 | 3.1e-42 | 31 | 172 | 3 | 150 |
GRAS 3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 lLl+cAe +++ d+ +a+++++ ls +p+gd++ R+++ ft AL+ l+ lppse++ ++ +++ +++++P+l+f+hltaNq PEQU_26150 31 YLLLRCAELIHHADHPAARRAISLLSAAtTTPYGDSTDRITHQFTLALSLLLNP-----LTHLPPSESN----NSAQSSYLSLYQITPFLRFAHLTANQ 120 58************************99899**********************9.....5567777776....3344577789**************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgsp 150 aIl+av+g++r+Hi+Dfd s+GlQWp++lqa+a+R+ ++pps+RiTg gs PEQU_26150 121 AILDAVDGHHRIHILDFDTSHGLQWPPFLQAIADRSdpANPPSIRITGTGSD 172 ***********************************97778*********983 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 28.131 | 3 | 184 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-39 | 31 | 172 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MLSSIKSHEE EGDEESHRRN RRHHDSPSPV YLLLRCAELI HHADHPAARR AISLLSAATT 60 TPYGDSTDRI THQFTLALSL LLNPLTHLPP SESNNSAQSS YLSLYQITPF LRFAHLTANQ 120 AILDAVDGHH RIHILDFDTS HGLQWPPFLQ AIADRSDPAN PPSIRITGTG SDPSTLTSLS 180 SRRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-21 | 12 | 182 | 1 | 177 | Protein SCARECROW |
5b3h_D | 5e-21 | 12 | 182 | 1 | 177 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020583340.1 | 1e-130 | protein MONOCULM 1-like | ||||
Swissprot | Q84MM9 | 2e-37 | MOC_ORYSJ; Protein MONOCULM 1 | ||||
TrEMBL | A0A2I0WBM1 | 8e-73 | A0A2I0WBM1_9ASPA; Scarecrow-like protein 18 | ||||
STRING | XP_008806184.1 | 1e-59 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3653 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 4e-22 | GRAS family protein |