PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_26065 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ARF | ||||||||
Protein Properties | Length: 653aa MW: 72047.9 Da PI: 8.6473 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77 | 2.1e-24 | 94 | 195 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF +++++ l PEQU_26065 94 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGKVWKFRHIYRGTPRRHLLTTGWSNFVNEKKLVAGDSIVFL--RTENGDL 188 89****************************996555555..8999*********************************************..4588999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ PEQU_26065 189 CVGIRRA 195 ****997 PP | |||||||
2 | Auxin_resp | 111.2 | 1e-36 | 263 | 345 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 + +a+ +++F+v+Y+Prast+eF+vk++ v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +d +rWp+S+Wr+L+ PEQU_26065 263 SASAARGQPFKVIYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISAVHVADLLRWPGSPWRLLQ 345 567899***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-38 | 85 | 197 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.54E-30 | 90 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.13E-22 | 93 | 194 | No hit | No description |
SMART | SM01019 | 7.6E-23 | 94 | 196 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-22 | 94 | 195 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.648 | 94 | 196 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-31 | 262 | 345 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 15.542 | 566 | 653 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MVQMPSVNSK VYYFPQGHAE HAQTPVDFGT SVRIPPLILC RVLSVKFMAD SVTDEVFAKI 60 QLIPLKSNEP DYNEEDELVL GNNGSDLQEK LASFAKTLTQ SDANNGGGFS VPRYCAETIF 120 PRLDYSADPP VQTVLAKDVH GKVWKFRHIY RGTPRRHLLT TGWSNFVNEK KLVAGDSIVF 180 LRTENGDLCV GIRRAKRGIG GGPEMSTGWN PPAGNCMYGG FSVFLREDES KFNRSNGNGG 240 RISSGSSMRG RGKVKADSVM EASASAARGQ PFKVIYYPRA STPEFCVKAS AVRAAMRIQW 300 CSGMRFKMAF ETEDSSRISW FMGTISAVHV ADLLRWPGSP WRLLQVSWDE PDLLQNVKRV 360 SPWLVELVSN MPAIHLAPPF SPPRKKPRLP HPEFSLDVPL STSPFTENTL IPSSSPLCCL 420 PDNAAAVVGI QGPRHSQYGA NLPELRFGKL HSGLFHTGFH RLDHFAPSHR ISTGLLVPNS 480 SVREDVSCLL TIGNASQNAI KPKFMLFGKP IITEEQLSLS PNNSNSDKTT NLSYGSGSSI 540 LQNGTGDNNS SSEGPVWYRD RKPSELGPCK LFIESEDVGQ TLDLSSFGSY EELYRRLANM 600 FGLEKAELNS RLLYRDIAGV VKHTGDEPFA EFMKAARRLT IFMDSGSDNI GKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-72 | 1 | 366 | 63 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020592362.1 | 0.0 | auxin response factor 18-like | ||||
Refseq | XP_020592363.1 | 0.0 | auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A2I0VRC9 | 0.0 | A0A2I0VRC9_9ASPA; Auxin response factor | ||||
STRING | XP_008785274.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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