PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_25584

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

bHLH

Protein Properties

Length: 480aa MW: 53162.5 Da PI: 5.7328

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_25584	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.8	7e-17	301	347	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq PEQU_25584 301 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 347 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.02E-17	293	351	No hit	No description
SuperFamily	SSF47459	7.72E-21	294	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.457	297	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-20	301	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-14	301	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-18	303	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MKHCVPDWKM EGGSTPFHDL HPATNQKSCF GQESDLIELL WENGKVVLHN QTTRRPAVTI 60 AESKQAQKSE TSLKWGVSVE NSSNSIQEDE TASWLQSPLE EPLDQEFSEF FCNMLNAESN 120 VNEKSNKGDK CVKFSSRKDC DACYRLPGLH PNHSMMLPPK PLDFVSTEDS VSLENGDVSK 180 MGELSSMRTM ESSICRSNED QNQVEAIHTS SNDGAVKECS QLGSVQNCSQ AITFDPMVAS 240 SSGGSGCSLG RVGKESKSHK RKGRDFEESE CQNEDVEQEP ILENKQAHRT APSRRSRAAE 300 VHNLSERRRR DRINEKMRAL QELIPHCNKT DKASMLDEAI EYLKSLQLQV QIMWMGSGMN 360 SLMFPSVHPP LPSIPSPVQF LGSTLSNESI SSISTPNPFS SPGLNPLNLR NQLPDIRFPV 420 PFSHCLGFFP RMELPTQVMG MYGYGSQVMH QNHTTAATVD GSPMPTVGAP SEDIQSGQKG

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MKHCVPDWKM EGGSTPFHDL HPATNQKSCF GQESDLIELL WENGKVVLHN QTTRRPAVTI  60
AESKQAQKSE TSLKWGVSVE NSSNSIQEDE TASWLQSPLE EPLDQEFSEF FCNMLNAESN  120
VNEKSNKGDK CVKFSSRKDC DACYRLPGLH PNHSMMLPPK PLDFVSTEDS VSLENGDVSK  180
MGELSSMRTM ESSICRSNED QNQVEAIHTS SNDGAVKECS QLGSVQNCSQ AITFDPMVAS  240
SSGGSGCSLG RVGKESKSHK RKGRDFEESE CQNEDVEQEP ILENKQAHRT APSRRSRAAE  300
VHNLSERRRR DRINEKMRAL QELIPHCNKT DKASMLDEAI EYLKSLQLQV QIMWMGSGMN  360
SLMFPSVHPP LPSIPSPVQF LGSTLSNESI SSISTPNPFS SPGLNPLNLR NQLPDIRFPV  420
PFSHCLGFFP RMELPTQVMG MYGYGSQVMH QNHTTAATVD GSPMPTVGAP SEDIQSGQKG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	305	310	ERRRRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020571341.1	0.0	transcription factor PIF4-like
TrEMBL	A0A2I0WZM4	0.0	A0A2I0WZM4_9ASPA; Transcription factor PIF1
STRING	XP_008811817.1	1e-113	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3107	36	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-37	phytochrome interacting factor 3